LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00389	ATGTTTATAGTCTTCAGTCAAGCTTCACATGTAATTCACTGCATCTGTTGTTTGTGTATGGATCACTTatgccttttttattttttatttttcatgatgCAGGTTCATGGTCCTGGTGCTGACCTAGATACACTGTGTATTGGGCCATCCTATGTCAACCGGGAGGAGGATTTTTTCTACACATTGCATGGTATCCTAGCTTGCGTAGACGAAGTTACTGAACTGCAACCAATTCCAGAAGCTCATGTCCCAGTTATGAAGTTCAAGTTTGACGGAATATCGATCGACCTTCTTTATGCAAGTATTTCTTGCTTGATTGTACCTGAAGAATTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCCACTGTTCGAAGTTTGAATGGTTGTAGGGTTGCTGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGTACTTTCGAACAACACTCCGGTGCATAAAGTTTTGGGCCAAAAGACGTGGTGTTTATTCCAACGTGACAGGTTTTCTCGGTGGTGTTAACTGTGCACTTCTTGTAGCTCGGGTATGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGAGTGTACACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGCTCGATAGAGGAGAACGAGCTCGGGTTTCCTGTATGGCATCCTCGAAAAAATCCTCGTGATCGATCCCATCTTATGCCAATCATAACCCCTGCCTATCCGTGCATGAATTCAAGTTATAATGTTTCCACAAGCACACTTCGAGTTATGATGGAGCAGTTCCAATATGGAAACAAAATCTGTGGGGATATAGACCTGAATAAAGTTTGCTGGAGTGCTCTGTTTGAACCAAACATTTTCTTTGAAGGCTACAAAAACTTTTTGCAAATTGACATAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGGACACTGACTTTGATGATCGAGCGTGATACTTTTGGGAAGTTGCAGTGCCATCCTGATCCCAAGGAGTATATTGATAATTCAAGGAACTGTGCACATAGTGCTTTCTTCATGGGCTTGCAGAGGAAACAGGGGGAGGTTGTTCAAGAAGGCCAGCAGTTTGATATACGTGGGACTGTTGAAGCATTTCGGCATTGTGTTAACATGTACAGTTTCTGGAAACCTGGAATGGACATGCATGTTTCCCACATTCGTAGAAGACAAATCCCAAGCTACGCCTTTCCTGATGGTTATAGACGATATCGACAATCAAGGTCAATGGCACAAGTGGAGAATCCTTCAAAATCAGTTTGTGAAAATGAGGCTTCTGGGTCTGAACTACGTGAGAGGAACTTAAAGAGGAAGCATGATGACAGTGTGAAGATGGATGTTTTACCGAAAAGGCGTTCTACCAGTCCTCCCGTGGAGAGCTTGACAGGAGGCATCTCGTGCCTCAGTGCTGCTGCGATGTCTGTTGATGCTGTTTCTGATTGTCAAGAGTTAAAAAATGTTGGGAGGATGAGTTCGTCGAGTAGTGAGCAAGATGAATTGGATAGAAGAATGTCTCCAGAAGCTGGTACTGAATGTGCATCAAATTCGAGTGTGGTTACATCCGTTTCTAGTGAAGGTGGCTCTCCTGAAGGTGTTGGCTCTGTATCAGTGGCAGGTTATGTTGAGGATAGCACCATGGATGTTGTTGAGGCGATGACCAACTGTAGATTCAAGGATATCACCTACAGGGCCGGTGAAAATAATCAAGTATTGCAAGACGCACTACATACACAGTTGGAGGTTTTGGCTTTCGATTCCTTTCCTAacttcaatttaatttctttcattttttaa	1866	0.4244	MFIVFSQASHVIHCICCLCMDHLCLFYFLFFMMQVHGPGADLDTLCIGPSYVNREEDFFYTLHGILACVDEVTELQPIPEAHVPVMKFKFDGISIDLLYASISCLIVPEELDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEYFRTTLRCIKFWAKRRGVYSNVTGFLGGVNCALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICGDIDLNKVCWSALFEPNIFFEGYKNFLQIDIVAADVDDLRAWKGWVESRLRTLTLMIERDTFGKLQCHPDPKEYIDNSRNCAHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHCVNMYSFWKPGMDMHVSHIRRRQIPSYAFPDGYRRYRQSRSMAQVENPSKSVCENEASGSELRERNLKRKHDDSVKMDVLPKRRSTSPPVESLTGGISCLSAAAMSVDAVSDCQELKNVGRMSSSSSEQDELDRRMSPEAGTECASNSSVVTSVSSEGGSPEGVGSVSVAGYVEDSTMDVVEAMTNCRFKDITYRAGENNQVLQDALHTQLEVLAFDSFPNFNLISFIF	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00389	621	MobiDBLite	consensus disorder prediction	449	472	-	-
	Tsu08g00389	621	Pfam	Poly(A) polymerase central domain	105	293	IPR007012	GO:0004652\|GO:0043631
	Tsu08g00389	621	Gene3D	-	112	293	-	-
	Tsu08g00389	621	MobiDBLite	consensus disorder prediction	533	554	-	-
	Tsu08g00389	621	Gene3D	Poly(A) polymerase predicted RNA binding domain	296	411	-	-
	Tsu08g00389	621	MobiDBLite	consensus disorder prediction	432	485	-	-
	Tsu08g00389	621	CDD	NT_PAP_TUTase	35	143	-	-
	Tsu08g00389	621	MobiDBLite	consensus disorder prediction	510	554	-	-
	Tsu08g00389	621	MobiDBLite	consensus disorder prediction	432	448	-	-
	Tsu08g00389	621	SUPERFAMILY	Nucleotidyltransferase	31	142	IPR043519	-
	Tsu08g00389	621	Pfam	Poly(A) polymerase predicted RNA binding domain	296	354	IPR007010	GO:0003723\|GO:0043631
	Tsu08g00389	621	PANTHER	NUCLEAR POLY(A) POLYMERASE 4	26	522	-	-
	Tsu08g00389	621	PANTHER	POLY A POLYMERASE	26	522	-	-
	Tsu08g00389	621	SUPERFAMILY	PAP/OAS1 substrate-binding domain	144	293	-	-
	Tsu08g00389	621	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	296	420	IPR011068	GO:0003723\|GO:0016779\|GO:0031123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00389	Tsu-Chr8	3793016	3798614	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00389	K14376		-	gmx:100798218	807.364

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g00389	08	3793016	3798614	Tsu08g00389	08	3793016	3798614	ECH