Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00306 ATGGGATCAAAGAAGGATTTGGCAGTGAATTATTTGACAAGATGGTTAGGGAAGAGATCAATGAAAATGAAGATCTTTTTGGGGATATTGCTTGCTTTTTGTGCTATAGTGATTTTAAAGTACACTATCACAGAACCTCACTTTTATTACATAGCCTCTGGATCAATCCATATTGCTGGTCTTGTTACCCTTGTATACAAGCTCTTTGTTTACAAGACTTGTTCTGGTATgtttATCCCTCAAGTTCCAAGAGCTCAATGCTGCATTCCTAGCATTAAGATTAGACTCAAATCATCCTATATCAAGGAGTTTGACAACATGTGGTTATCCTTTTTGGTGGTGCCTTCTGCAATTCTAGCAGTACTAATCCAACCAAGGTCACCTCAATATTACTGGATAGCTAGAGTCATTTTTGCATTCACTTTGTATTTGGAAACTGTTGCAATACTTCCTCAAATTCGTTATATGCAAAATGCAAAGaTGATTGAAACATTCACAGGATATTATGTATTTGCTCTTGGTGTCTCAAGATTCTTCGCGTTGGCTTATTGGCTTATTCATATTTATGAAACTCGAGGGAGATATCTATTTTTCTTTGGTTATGGCTATTATTGGATGGTGGTTCTTCAAGTAATAGAGTTTGTTCAGTCTTTCGTCTTAGCAGATTTTTGTTACTATTACATCAAGAGcTTCATGGCAGGGCAACTTTTGAAGAAGATGCCTGTTTAA 729 0.3594 MGSKKDLAVNYLTRWLGKRSMKMKIFLGILLAFCAIVILKYTITEPHFYYIASGSIHIAGLVTLVYKLFVYKTCSGMFIPQVPRAQCCIPSIKIRLKSSYIKEFDNMWLSFLVVPSAILAVLIQPRSPQYYWIARVIFAFTLYLETVAILPQIRYMQNAKMIETFTGYYVFALGVSRFFALAYWLIHIYETRGRYLFFFGYGYYWMVVLQVIEFVQSFVLADFCYYYIKSFMAGQLLKKMPV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00306 242 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 1 77 - -
Tsu08g00306 242 Pfam ER lumen protein retaining receptor 87 186 IPR000133 GO:0006621|GO:0016021|GO:0046923
Tsu08g00306 242 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 92 241 - -
Tsu08g00306 242 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 77 IPR000133 GO:0006621|GO:0016021|GO:0046923
Tsu08g00306 242 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 92 241 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00306 Tsu-Chr8 2905291 2908739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00306 1 242 Miscellaneous Gene Families AT3G25160 43.590 4.19e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00306 - K10949 gmx:100790210 268.085