Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00251 ATGgccaaacaaaaccaaaccgAAACTCAAACCAAAGAACCCGGTTCAGTTGAACAAAATTCTCAACACTTGACTCCTTTGTCTCCTTTTAAATACTCGAACCGGGTTCAATTAAAAACACTTCTTCTAGACCGAACCGACGCCGGTTCAGAACTTGCAGGACAGAGAGTGGTGATAGGCGGATGGGTGAAGTCATCGAAGGAAGTTGAGAAATCTTCTCCTCTTCCGCCGCCGCCATTGACGGCCGACGATGAAACAATTCCGGCGAGAGATGTGTCGTGTGTGGAGATTCTTCAGTCACGGATTCCTTTGATTCGTAATATAATGGAAGTTTTGGGAGGAAGTGGTTACGTGTCTCGCAAGAAACTGCGTGATTCTTCTATTCCTAAACCTCTTCCTCCTAAATCTTCCACCGTTTATCTTCTTCTCACAGATGGTTCATGCGTTGCCACGCTTCAGGTTGTGGTCGATTCCGCAGTAGCTACACCTAGCCGTCTTTTGCCTACCGGAACATGTATATTAGTGGAAGGTCAGCTAGAACGACCACCAACTGAAGGGAAGCATGCTATTCAGTTAAAGGCTGACAAAGTTCTTCACATTGGGATAGTAGATGTTGGCAAGTATCCATTATCAAAGAAACGAGTTCCACTGGATACATTAAGAGATTACTCCCATTTTCGGCCTCGAACAACTACGGTGGCAACTGTCATACGAGTTCGCAGTGCTCTATCTTTTGCAACCCACTCATTTTTCAAGGATCATGCATTTATCGACGTGCAAGTACCCACTATAACCACCACAGACTGCGAGGGATGTGGCAACATGTTCCAGGTTACGACTACTACCTCGGATCAGAAAGCTGACAAGGAGAAGCTGAGTACCATTTATGAGAATGAAGGTTTTAGCCTTGAAATTGTGAAGGCAGCTGCCAAAGAGAAAAGCAAACAAGTTGAAGCTTTAAAAAGAAGCGAAAGCAATAGAGAAGCGCTGGCGGCAGCAATTCATGATCTGCAGAAAACTAATGAACTGGCATCACAATTGGAAgcaagagaaaagaaaaacattggAACTTCATTGAAGGATGACAAAGTAGACTCTTCCAAATATTTTTTCGCTACTCAAACTTATTTAACTGTCTCTGGTCGCTTACATCTGGAGAGTTATGCATGTGCTCTTGGAAATGTGTACTCATTTGGACCTAGATTTCTGGCAGATAAAACAGATTCTGCTAAACATGCTGCAGAAATGTGGATGGTTGAGGCTGAAATGGCTTTTTCTGAATTGAAGGATTCCATGAACTGTGCGAATGACTTGTTCAAATACCTATCCTTAGATGTTTTTAGAAAGGCTGAAGATAAGAAATTTGAAACAAAGTTTGATTCAGGTGTTAAGCTCACTTCAGATCACCTAAGCTATCTAGCTGATGCCATCTACAAGAAGCCGGTTCTGGTACACAGTTATCCAAAAGAAGCTAAGCCATTCTATGTTCGCGTTAATGATGATAAAACTGTAGCTGCATTTGATCTTTTTGTCCCAAAGgTTGGAACTGTAATTTCTGGCAGTCAAAATGAGGAGCGGCTTGCTGTGATAAACTCGAGAATTACTGAGTTGGGTTTGCCGCAAGAGAAGTATGAATGGTACTTAGATCTTTGTCGAAATGGAACTGTTAAGCGCTCAGGGTTCACTCTGAGGTTCGACCttttggttctttttataaCTGGCCTTAGCAATGTTAAGGATGTTATCCCTTTTCCAAGAAGCTATGGCAAGGCCAACAACTAA 1782 0.4141 MAKQNQTETQTKEPGSVEQNSQHLTPLSPFKYSNRVQLKTLLLDRTDAGSELAGQRVVIGGWVKSSKEVEKSSPLPPPPLTADDETIPARDVSCVEILQSRIPLIRNIMEVLGGSGYVSRKKLRDSSIPKPLPPKSSTVYLLLTDGSCVATLQVVVDSAVATPSRLLPTGTCILVEGQLERPPTEGKHAIQLKADKVLHIGIVDVGKYPLSKKRVPLDTLRDYSHFRPRTTTVATVIRVRSALSFATHSFFKDHAFIDVQVPTITTTDCEGCGNMFQVTTTTSDQKADKEKLSTIYENEGFSLEIVKAAAKEKSKQVEALKRSESNREALAAAIHDLQKTNELASQLEAREKKNIGTSLKDDKVDSSKYFFATQTYLTVSGRLHLESYACALGNVYSFGPRFLADKTDSAKHAAEMWMVEAEMAFSELKDSMNCANDLFKYLSLDVFRKAEDKKFETKFDSGVKLTSDHLSYLADAIYKKPVLVHSYPKEAKPFYVRVNDDKTVAAFDLFVPKVGTVISGSQNEERLAVINSRITELGLPQEKYEWYLDLCRNGTVKRSGFTLRFDLLVLFITGLSNVKDVIPFPRSYGKANN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00251 593 SUPERFAMILY Class II aaRS and biotin synthetases 217 587 IPR045864 -
Tsu08g00251 593 Gene3D Bira Bifunctional Protein; Domain 2 211 448 IPR045864 -
Tsu08g00251 593 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 444 593 - -
Tsu08g00251 593 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 31 443 - -
Tsu08g00251 593 Coils Coil 303 350 - -
Tsu08g00251 593 CDD EcAsnRS_like_N 130 202 - -
Tsu08g00251 593 Gene3D Bira Bifunctional Protein; Domain 2 449 592 IPR045864 -
Tsu08g00251 593 Pfam tRNA synthetases class II (D, K and N) 367 586 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu08g00251 593 Pfam tRNA synthetases class II (D, K and N) 218 283 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu08g00251 593 PANTHER ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2-RELATED 444 593 - -
Tsu08g00251 593 MobiDBLite consensus disorder prediction 1 29 - -
Tsu08g00251 593 PANTHER ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2-RELATED 31 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00251 Tsu-Chr8 2243717 2247299 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00251 K01893 - gmx:100787363 782.326