Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00233 ATGGAAGCCACAAAAAGGCCTTCTTCTTGTATCTCCAAGTGGCAATACTCTTCAACCAAAAGCAAAATTGTTAATAACTTGAATCCTGTATGCCATGCTATCCAAAAATTAACTCTCAAAGGAAAGTTTGTGATCAGCTTCAATCAAAAGAAATCAATACCTGGAAAATTTATTTCTGTTCAGATTTATAGTGGCACAGAAGTGGATCCTAATACTGGTAAAGGGTGGTTGAGTGAGAAAGCATATTTTAAGGAATGTGGGAGCAAGAAACATCACCATGATGATGTTGATGCACAAACCAagattaaaacatataaaattaaactacATGTTGATTCACATTTTGGAACTCCAAGAGCTTTTGtaattcaaaacaaacacaGGAAGAAATTCTATCTTCTGTCTGCATCTATTGAGACTTGTACAAATATAATCATTCACTTTGATTGCAATTCTTGGATTTATTCAATCAAGAAGACCAAATTTGATAGACTCTTCTTCTCAAATAGATGTTATCTTCCAAGTCAAACACCTAGAGCTTTATTGGAACTAAGAAATGAAGAGCTTGATAAATTGAGAGGTAATGGAAcaggagaaagaaaagaagggGATAGAATCTATGATTATGATTACTACAATGACCTCGGTGATCCTGACAAAGGTTTGGAGCATTTTAGACCTATCTTAGGTGGTTCGAGGTTATATCCCTATCCACGTCGAGTTAGAACAGGTCGAAAACATAGCACAGCAGGTCCATCAACTGAGATCAGGCCACAAGCAACAAAATTTGACATATATGTTCCTTCAGATGAGATATTTAGCCCTAACAAAATGAAAGAGCTTAAATCAAATTCTATCAATACCATAGTACATTTACTATCTTCAAAGACAGAATCATTACCTCAACAAAGTTCTAGAAGCTTTCAATCATTTGAAGACATACTTGGAATGATCTCTAGCAATAGAAACCAAACAATACAGGTATGGATCAGAGACAACTTAAAGAAATTGGTGCCAAATGAATACTTAAAGGAAATAACTCATGCAATCAAGGAAAATCATCAGCATGTTCCTATCTCTCAAATCATATATGAGAATGAATGGGCTTGGAATGATGATATGGAGTTTGGACGACAAATTCTTGCAGGAACACATCCTGTCAGAATCCAGTGTTTGATGACATTTCCACCTCAAAACAAATATGGAGTACAGAGTTCAATAGAACAATCAATCATAGAACAGATGCTTGAAGGATGGACACTGACTCAGGCTTTGGAACAAGGAAGAATATTCATGTTGGATCACCATGACTATCTCATGCCATATTTGAACAGAATAAATGCAAATGGGGTATGTGCTTATGCATCAAGGACACTTCTATTCTTAAGAAGTGATGGCATGCTTAAGCCATTAACAATAGAACTCAGCTTGCCAGGACCATCTCTAGCTCTTGAAGTCCATAGAACTTTTCTTCCATCAAAGCAAGGAACACAAGCAGCACTTTGGCAACTTGCCAAAGCTCATGTTTTAGCTAATGAGGCTTTTTACCATCTACTAGTTAGCCATTGGTTATACACACATGCAGTTGTTGAACCATTTATCATTGCTACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATAAGATATTGAATCCTCATTTCAAAGACACAATGCACATAAATGCCTTGACTAGACTTATCCTTATCAATTCTGGAGGAATTCTTGAGAAAATATTGTTTCCTGGTGAAACCTGTATGCAAATAACATGTGATCTTTACAAAGAGTGGAAATTTACTGAACAAGGACTTCCTGCTGATCTTATCAAAAGGGGCATGGCTGTAGAAGACACAGATGAAAACAACCCAACTGGGATTCAACTTCTCATGTTGGACTATCCCTATGCCATTGAAGGACTTGAAATATGGACTGCCATCAAATCTTGGGTCAATGACTTCTGCTCACTCTTTTACAAAGATGACGAAGCTATCATAGCTGATGTTGAACTCCAAGCATGGTGGTCAGAGATTCGATTTATAGGCCACGGCGATAACCATAATGAGACATGGTGGTACCAAATGACAACACTCTCAAACCTTGTAGAAGCATTAACAACTCTCATATGGATTTCATCGGCACGCCAAGCAGTTATAAACCACCAAAAACATACACAAAATGGTAATTATCAAACATATTATCCTACAGTATGCAAGAAGTTCATTCCACTAGAAGGAACAGTTGAGTTTGGTGAGTTTCTTAAGGATCCTGATAAGTTCTTAATGAAGATGTTACCTCATAGGTTCGAGATAATTCTTGGTTTGGCATTGGTAGATTTGCTGTCAAAAAATGCTTATGATGAAGTGTACTTGTTGAGATGCCAACCATCACATGGTTGGTTAGACAATGAAATTGTTCAGAATAGATTTGCTGAGTTCAAAGAAGAACTTAAGGAGATTCAGATAAGGATCTTGCAGAGAAATAAAGATCCTAAGCTTAAGAATAGGCGTGGTTCTGCAAAAATTGATCACAATATTTTGTATCCTAAGATGCCTAGTTCTGGATCAAGAAGATGGAATCATGGGAAGAGGAGTGTCTTATAA 2601 0.3606 MEATKRPSSCISKWQYSSTKSKIVNNLNPVCHAIQKLTLKGKFVISFNQKKSIPGKFISVQIYSGTEVDPNTGKGWLSEKAYFKECGSKKHHHDDVDAQTKIKTYKIKLHVDSHFGTPRAFVIQNKHRKKFYLLSASIETCTNIIIHFDCNSWIYSIKKTKFDRLFFSNRCYLPSQTPRALLELRNEELDKLRGNGTGERKEGDRIYDYDYYNDLGDPDKGLEHFRPILGGSRLYPYPRRVRTGRKHSTAGPSTEIRPQATKFDIYVPSDEIFSPNKMKELKSNSINTIVHLLSSKTESLPQQSSRSFQSFEDILGMISSNRNQTIQVWIRDNLKKLVPNEYLKEITHAIKENHQHVPISQIIYENEWAWNDDMEFGRQILAGTHPVRIQCLMTFPPQNKYGVQSSIEQSIIEQMLEGWTLTQALEQGRIFMLDHHDYLMPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGPSLALEVHRTFLPSKQGTQAALWQLAKAHVLANEAFYHLLVSHWLYTHAVVEPFIIATKRRLSVMHPIHKILNPHFKDTMHINALTRLILINSGGILEKILFPGETCMQITCDLYKEWKFTEQGLPADLIKRGMAVEDTDENNPTGIQLLMLDYPYAIEGLEIWTAIKSWVNDFCSLFYKDDEAIIADVELQAWWSEIRFIGHGDNHNETWWYQMTTLSNLVEALTTLIWISSARQAVINHQKHTQNGNYQTYYPTVCKKFIPLEGTVEFGEFLKDPDKFLMKMLPHRFEIILGLALVDLLSKNAYDEVYLLRCQPSHGWLDNEIVQNRFAEFKEELKEIQIRILQRNKDPKLKNRRGSAKIDHNILYPKMPSSGSRRWNHGKRSVL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00233 866 SMART LH2_4 37 169 IPR001024 GO:0005515
Tsu08g00233 866 ProSiteProfiles PLAT domain profile. 56 168 IPR001024 GO:0005515
Tsu08g00233 866 Pfam Lipoxygenase 181 848 IPR013819 GO:0016702|GO:0046872
Tsu08g00233 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 51 172 IPR036392 GO:0005515
Tsu08g00233 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 171 856 IPR013819 GO:0016702|GO:0046872
Tsu08g00233 866 Gene3D - 387 513 - -
Tsu08g00233 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Tsu08g00233 866 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Tsu08g00233 866 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Tsu08g00233 866 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Tsu08g00233 866 Gene3D - 515 858 - -
Tsu08g00233 866 SUPERFAMILY Lipoxigenase 173 850 IPR036226 -
Tsu08g00233 866 PANTHER LIPOXYGENASE 99 850 IPR000907 GO:0016702|GO:0046872
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 203 219 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 236 255 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 138 156 IPR001246 GO:0016491
Tsu08g00233 866 PRINTS Plant lipoxygenase signature 164 185 IPR001246 GO:0016491
Tsu08g00233 866 Coils Coil 802 822 - -
Tsu08g00233 866 Gene3D - 191 294 - -
Tsu08g00233 866 Gene3D - 296 386 IPR027433 -
Tsu08g00233 866 PANTHER LIPOXYGENASE 99 850 - -
Tsu08g00233 866 Gene3D PLAT/LH2 domain 30 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00233 Tsu-Chr8 2143098 2148222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00233 55 848 Acyl Lipid Metabolism Gene Families AT3G22400 42.629 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00233 K00454 - gmx:100793997 1330.47