Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00209 ATGACAggaggaaaagaagaaaagaaagatgagaagggaaaagctaaaattgaagaaaaagtagaaaagaagaaagatgaaattgaattgatcaCTGCtatttacaaattaaatttgcATTGTCAAGAATGTGGGAATAAGATTAAGAAGCATCTCTTAACTACTCAAGgaGTACAGACTGTGGAGATGCATATTGAGAAAGGAGAAATCAAAGCAAAAGGGAAATTGGACCCTTTGAAAATCTTGAAGCTTATAGAGAAGAAAAGCAATAGAAAAGTTGAATTAATATCACCAAAAGTGAAACCCAAGGAGATTACTATTACTGATAAAAAGCCAAAGGAAACTAAGGATCCAATTGTCCGAATTATCACGATGAAGGTTCACATGCATTGTGACAAATGTGAGGCTGACCTAAAACGTAGGTTAATCAAGCACAAAGgTATTTTCAATGTTAAAACCGACAAGAAAGCTCAAAGTCTAATAGTTGAAGGGACTATTGAAGTAGAGAAGTTGACATCATTTTTGAGAAAAAGAGTGAATACAAATGCTGAGGTTATTTCcataaaagaagagaaaaaagaagaaaagaaagaaaagggcaaagaagaagaaaagaaagacaaaggcaaagaagaagaaaaaaagaaagaagaaaagggCAAAGAAGGAAAATCTTCAGAATCAACAAAAGTAATAGAAATTCATCATCATGGGAATGTACAAGATGAGATTAAAATAAAGGACAATAACAATGTTCCTTATATTATTCATTATGTTTATGCACCACAAATTTTCAGCGATGAGAATCCTAATTCATGTTCTATTTCATAG 831 0.2479 MTGGKEEKKDEKGKAKIEEKVEKKKDEIELITAIYKLNLHCQECGNKIKKHLLTTQGVQTVEMHIEKGEIKAKGKLDPLKILKLIEKKSNRKVELISPKVKPKEITITDKKPKETKDPIVRIITMKVHMHCDKCEADLKRRLIKHKGIFNVKTDKKAQSLIVEGTIEVEKLTSFLRKRVNTNAEVISIKEEKKEEKKEKGKEEEKKDKGKEEEKKKEEKGKEGKSSESTKVIEIHHHGNVQDEIKIKDNNNVPYIIHYVYAPQIFSDENPNSCSIS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00209 276 SUPERFAMILY HMA, heavy metal-associated domain 119 177 IPR036163 GO:0046872
Tsu08g00209 276 SUPERFAMILY HMA, heavy metal-associated domain 33 88 IPR036163 GO:0046872
Tsu08g00209 276 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 4 23 275 - -
Tsu08g00209 276 Coils Coil 178 221 - -
Tsu08g00209 276 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 23 275 IPR044577 GO:0046872
Tsu08g00209 276 CDD HMA 124 169 IPR006121 GO:0046872
Tsu08g00209 276 Coils Coil 14 34 - -
Tsu08g00209 276 MobiDBLite consensus disorder prediction 191 236 - -
Tsu08g00209 276 Gene3D - 120 194 - -
Tsu08g00209 276 Gene3D - 31 103 - -
Tsu08g00209 276 Pfam Heavy-metal-associated domain 125 172 IPR006121 GO:0046872
Tsu08g00209 276 Pfam Heavy-metal-associated domain 38 88 IPR006121 GO:0046872
Tsu08g00209 276 CDD HMA 39 87 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00209 Tsu-Chr8 1896683 1898385 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00209 - - gmx:100783418 333.569