Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00202 atgaaggatgaagaagagatgatgaagaagacaacaacaacaaccttggAAGCTTCAAATGATGTTCCTGCTGTTGAAGGAAATGGAAATGGTGCTGATGATGGTGTTGAAGGTGACAAAGATGGTTCTTTTACTGAAAAGGAGAATACCCAGTTGAAAAAAGATGGAAATGAGGAGACCCAACTTGAAGATTCTGAAGAAGATGAATCAGATGAAGAACAACAAGAAAATGGGGCTGAGGATACTGAACTTGAACAAAAAATTCCTTCTCTTGATGATGGCTTCTATGAAGTTGAAGTTATTCGTCGCAAGAGAACTCGCAAGGGAAAGGTTGAGTACTTTGTCAAATGGTTGGGATGGGATGAGTCAGCAAACACTTGGGAGCCTCCAGAAAACTTAGTCGGTGTTCCTGATGTTATTGAAGCTTTCGAAGAAGGgCAAAAATCAGGAAAGCAACGGAAGCGCAAACGCAAGGAAGTGGTTCATAGCGCTCCTCTAAAGAAGAGGGTGGAGCGTTCAGCCACTCCTTACAGCCTTAGATGCTTAAAAACTAGTACAGCTAGTAAGAATAATTCACAGGCGGAAGCTCAAAACAATTCACAGTCTGCCCCTCTTGAGGAAAAACCTATTATTCCTGCTATTCCCGACATTCCTGCATTTCCTCAGACCGTGCTGTTTGCCGATGAAGTAGAGAGTGACGGTGATGGAAACAGTCTGAAAAGAACTGATTATGCTGATGGGACTAGGTCTGAAAATCTTCCAAAAGAGGTTCCTCTAAATAACGAGGAAAAAGACTATGATCCTAAGCTCAGTGAACTTAAAGCTGCGACAACCAATGGAAATGGCGCAGACAACCTCGCAATACCGTTTCAAGAAGCTATGGTTTCTCCAGAAAATGCTCAAATGAATGATCTACCAATTACTGAAAATGCGGTTGGTACAGAACCGATTACTGAAAACAATGTGGTTGGCACAGAACAAGTTCAAAATGGCCCCAGCAGGTCAGCAAACAGACGGAGAAAGTCGTTATCTGTGAAGAGGTTCAAGATAGATTCATGTGCTAATAAGCTGGATAATACACAAAAGCCAAATTCTGCACCGGTTGGTATGACTGATCCAGCAAAAACAGGTGCTACTGATAATGTGGCGGCTCCTAGTAGTCATACAATGCCGGAACCTGTTAAACCTGCTTGTGATATTGTCAAGATTGTAAAGCCTGTAGACTTTAAAGCTGCGGTAGCCAGTCCCATGCAGGATGTTTTGGTGACTTTTGAGGCTTTAAGCTGA 1287 0.4103 MKDEEEMMKKTTTTTLEASNDVPAVEGNGNGADDGVEGDKDGSFTEKENTQLKKDGNEETQLEDSEEDESDEEQQENGAEDTELEQKIPSLDDGFYEVEVIRRKRTRKGKVEYFVKWLGWDESANTWEPPENLVGVPDVIEAFEEGQKSGKQRKRKRKEVVHSAPLKKRVERSATPYSLRCLKTSTASKNNSQAEAQNNSQSAPLEEKPIIPAIPDIPAFPQTVLFADEVESDGDGNSLKRTDYADGTRSENLPKEVPLNNEEKDYDPKLSELKAATTNGNGADNLAIPFQEAMVSPENAQMNDLPITENAVGTEPITENNVVGTEQVQNGPSRSANRRRKSLSVKRFKIDSCANKLDNTQKPNSAPVGMTDPAKTGATDNVAAPSSHTMPEPVKPACDIVKIVKPVDFKAAVASPMQDVLVTFEALS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00202 428 SMART chromo_7 95 148 IPR000953 -
Tsu08g00202 428 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 22 427 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 33 60 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 233 263 - -
Tsu08g00202 428 ProSitePatterns Chromo domain signature. 113 133 IPR023779 -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 356 392 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 61 79 - -
Tsu08g00202 428 ProSiteProfiles Chromo and chromo shadow domain profile. 96 155 IPR000953 -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 144 169 - -
Tsu08g00202 428 Gene3D - 90 162 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 1 91 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 229 263 - -
Tsu08g00202 428 MobiDBLite consensus disorder prediction 181 205 - -
Tsu08g00202 428 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 22 427 IPR044251 GO:0006325|GO:0031507
Tsu08g00202 428 CDD CD_CSD 96 145 - -
Tsu08g00202 428 Pfam Chromo (CHRromatin Organisation MOdifier) domain 96 145 IPR023780 -
Tsu08g00202 428 SUPERFAMILY Chromo domain-like 85 153 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00202 Tsu-Chr8 1855941 1859881 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00202 - - aprc:113849713 320.087