Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00168 ATGATGGCAGTGTTGAGTAATAGCAGTCCATGGACAAAGGTTGCTACACCATCTTTCccctttcaatttcttcatcaatCATACTCTTACACTTCACGAATCTTCTCCTTCCGACGTAAATTCTCTGTCAATGCTCTTTCACAACAATCCCTTCCTGTTCGTGTTCGTTTTGCTCCTTCTCCTACTGGTAACCTTCATGTTGGTGGTGCCAGAACTGCCCTCTTCAATTACTTGTTTGCTAGGTCGAAAGGTGGGAAATTTGTGTTGAGAATTGAGGATACTGATTTGGAGAGGTCTACAAGGGAATCTGAGGAGGCGGTGCTTCGAGATCTTACTTGGCTTGGCCTTGATTGGGATGAAGGACCTGGTGTTGGTGGAGATTATGGTCCTTATAGGCAATCCGAGAGGAATTCTTTGTACAAAGAATATGCTGAGAAACTCCTTCAATCCGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGTTTGCTAAACTAAAGAATTTGCCTCCAGTATACACTGGTAAATGGGCCTATGCAACAGATAAGGAAGTGGAAGAAGAGCTAGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTACCGACTTAATACGAGGCGAgGTTAGTTGGAATTTGGATACGCTTGGAGATTTTGTGATAATGAGAAGTAATGGTCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCCCATGTTATTAGAGCGGAGGAGCATTTACCGAACACACTAAGGCAGGCGTTAATATACAAGGCACTAGAATTTCCCATGCCTCATTTTGCACACGTTTCCTTGATTTTAGCTCCCGATCGGAGTAAATTATCAAAGCGACATGGGGCAACATCAGTCGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCAGTGAATAATTACCTTGCATTATTAGGTTGGGGCGATGGGACCGACAATGAGTTTTTCACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAACAAAAGTGGTGCCGTATTTGATTCCACAAAGTTAAGGTGGATGAATGGTCACTATTTAAGAGCACGTCCATCAGAGGAGGTGACAAAACTTATCGCGGAGCGCTGGAAGACAGCTGGCTTGCTCACGGTATCAGAAGGGCCCTTTGTTGATGAATCAATTGAACAACTTAAGGATGGGATTGACTTGATAACTGATGCAGACAAGGCACTTTCTAACTTGCTTTCTTATCCTCTACACGATACTTTAGAAAGCCATGAAGCGGAATCTGTCATACAAGATAATCTTCAAGAGTTTTGTGCAAGCTTGTTGGCTGCCTATGATAGCGGTGATCTGGTACGTGCACTCGAAGAAGGCCAAGCTGGCTGGAAAAATTGGGTCAAAAGCTTCGGCAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCGCTTCGGCTTCTGCTGACCGGAAAACTCCACGGGCCTGATATAGGAGCTAGTGTTGTATTGCTTTATCAAGCTGGGACTACTGGTATCATAGCTCCTGAAGTTGGTTTTGTGACCATTGATGAAAGATTTAAAGTGCTTAGACAAATTAATTGGGAAACACTGTCCAAAGATCATGCTGTGAAGGAGGAGACTGCTTCACTGTCTAATTGA 1704 0.4272 MMAVLSNSSPWTKVATPSFPFQFLHQSYSYTSRIFSFRRKFSVNALSQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLTWLGLDWDEGPGVGGDYGPYRQSERNSLYKEYAEKLLQSGQVYRCFCSNEELEKMKEFAKLKNLPPVYTGKWAYATDKEVEEELAKGTPYTFRFRVPKGSLKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAVNNYLALLGWGDGTDNEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGHYLRARPSEEVTKLIAERWKTAGLLTVSEGPFVDESIEQLKDGIDLITDADKALSNLLSYPLHDTLESHEAESVIQDNLQEFCASLLAAYDSGDLVRALEEGQAGWKNWVKSFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGASVVLLYQAGTTGIIAPEVGFVTIDERFKVLRQINWETLSKDHAVKEETASLSN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00168 567 Pfam tRNA synthetases class I (E and Q), catalytic domain 53 368 IPR020058 GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 Gene3D HUPs 44 377 IPR014729 -
Tsu08g00168 567 Pfam Anticodon binding domain 400 519 IPR045462 -
Tsu08g00168 567 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 38 546 - -
Tsu08g00168 567 Hamap Glutamate--tRNA ligase [gltX]. 52 551 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Tsu08g00168 567 Gene3D - 436 526 IPR020751 -
Tsu08g00168 567 PRINTS Glutamyl-tRNA synthetase signature 56 68 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 PRINTS Glutamyl-tRNA synthetase signature 241 251 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 PRINTS Glutamyl-tRNA synthetase signature 85 98 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 PRINTS Glutamyl-tRNA synthetase signature 70 81 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 PRINTS Glutamyl-tRNA synthetase signature 257 265 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Tsu08g00168 567 CDD GluRS_core 53 375 IPR033910 GO:0006424|GO:0008270
Tsu08g00168 567 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 70 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu08g00168 567 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 362 520 IPR008925 GO:0000049
Tsu08g00168 567 PANTHER GLUTAMATE--TRNA LIGASE 38 546 - -
Tsu08g00168 567 SUPERFAMILY Nucleotidylyl transferase 53 361 - -
Tsu08g00168 567 TIGRFAM gltX_bact: glutamate--tRNA ligase 53 520 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00168 K01885 - gmx:100810730 942.569