Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00158 ATGATCTTCACATCTAAATTGGGCATTGCTATGGGTGAAACTctaaatattgaaaattttggGGCCAAACCTAATGGTGAAATTGACTCTACAAAAGCAATTCTTGCTACATGGGCTAGTGCATGTAGCTCACCAACACCAACCACAATTTATGTGCCACAAGGAAAGTTTTTAGTTAGTGATAGTGTAGTGTTTAAGGGGAGTTGCAATAACAATGATATCACGGTTAATATTGATGGTACAATATTAGCAAATTCTAATTATGATGTTATTGGAAATCAAGAGAGTTGGTTGCTTTTTGAAGATGTTGATGGAGTTTCAATTATTGGTAATGGCTTCCTTGATGGTCAAGgcacaagtttgtgggattgtaAAAGATCTGGTGAGAGTTGCCCAATGGGTGCTACGAACTTAAGATTTAGAAATTCCAACAACATAGTTATCAATGGGATAACCTCATTGAATAGCCAAATGTTTCACATTGTGATAGACAAATGCAATAATGTTAAAGTACAAGAGGTTAAGATATCGGCTCCAGGAAATAGTCCTAATACAGATGGTATTCATGTTGAACTCTCCTCGAGTGTCAACATTCTCAATTCCAATATAGCAACAGGTGATGATTGCATCTCAATTGGACCTGGAACAACAAATTTATGGATAGAAGACATTGTTTGTGGACCTGGTCATGGAATTagTGTTGGAAGTTTGGGCAAGGAATTTGAAGAGCTTGGTGTGGAACATGTAACAGTTAAAACAGTGAAATTTATTGGTACAAATGCTGGTGTGCGAATTAAATCTTGGGGGAGACCTAGCAATGGATTTGTAAGAAACGTCATTTTCCAACATGTTACTATGGTTAATGTTCAAAATCCTATTTTGATAGACCAAAATTATTGTCCTACTAAGAAGGATTGTCCTGGTCAGGCATCAGGGATTAAAATTAGCAACATTATGTACCAAAATATTCATGGAACTTCAGCAACAGAGGTAGCAGTTAAATTTGATTGTAGTCCAACAACTCCATGTACTAGAATATGCTTGGAAGATGTGATGCTTACATATGAAAACAAACAAGGTGAATCATTATATAACAATGCATTAGTTCAACCTAACAATTGTGTAGTTCAACCTGGTGAACCCACCACTAGTGGAGACAAGCACAATCTTCCACATATAAAATCAGACATGATCATTGTTGACAGTACCATTAATCTTAAGCTTCCACAAGGTTCCAATGAATTGCTGCTAAAAAATCTGTATTTGTCTTGTGATCCATACATGAGGATCATGATGACCAAGGACACTACTTCTGGAATTGGTGCTCTCACCCATGGTTCTCCATTGACAGGACTTGGAGTATCGAAAGTTATAGAATCCGGACATCCAGATTATAAGAAAGATGATATAATTTGGGGTATGACTAAATGGGAAGAGTATAGCTTGGTTCCTGCTACTGGAATGTTCAAAATTGAACACACTGATGTCCCACTTTCTTACTATACCGGAATTCTCGGTATGCCGGGAATGACTGCTTATGCAGGTTTGTTTGAAGTAGGAACTCCCAAAAAAGGAGAGAATGTTTTAGTTTCAGCTGCATCTGGTGCAGTTGGTCAACTTGTCGGACAATTCGCTAAGTTAACCGGTTGTTATGTTGTTGGAAGTGCTGGAACTAAAGAAAAGGTGGATCTATTAAAGAATAAATTTGGATATGATGAAGCTTTTAACTACAAAGAAGAGAATGACCTCAATGCAGCATTGAAAAGGTACTTTCCAGAAGGCATTGACATTTACTTTGAGAATGTTGGAAGCAAGACACTTGATGCTGTACTGTTGAATATGAGAGTCCATGGTCGCATACCTGTATGTGGAATGATTTCACAGTATAATCTTACTCAACCTGAAGGTGTAATAAATTTAGCACATATCATATATAAGCGGATTCGTATGCAAGGGTTTGTTGTATTTGATTACTATCACCTGTATACAAAATTCTTGGAGTTTGTCCTGCCTCTTATAAGAGAAGGAAAGGTTGTTTATGTGGAAGACATAGCTGAGGGACTAGAATATGGCCCTGCAGCATTAGTTGGTCTCTTTAGTGGTCACAATGTTGGTAAACAGGTGGTTGTTGTTGCTCATGAGTGA 2145 0.3683 MIFTSKLGIAMGETLNIENFGAKPNGEIDSTKAILATWASACSSPTPTTIYVPQGKFLVSDSVVFKGSCNNNDITVNIDGTILANSNYDVIGNQESWLLFEDVDGVSIIGNGFLDGQGTSLWDCKRSGESCPMGATNLRFRNSNNIVINGITSLNSQMFHIVIDKCNNVKVQEVKISAPGNSPNTDGIHVELSSSVNILNSNIATGDDCISIGPGTTNLWIEDIVCGPGHGISVGSLGKEFEELGVEHVTVKTVKFIGTNAGVRIKSWGRPSNGFVRNVIFQHVTMVNVQNPILIDQNYCPTKKDCPGQASGIKISNIMYQNIHGTSATEVAVKFDCSPTTPCTRICLEDVMLTYENKQGESLYNNALVQPNNCVVQPGEPTTSGDKHNLPHIKSDMIIVDSTINLKLPQGSNELLLKNLYLSCDPYMRIMMTKDTTSGIGALTHGSPLTGLGVSKVIESGHPDYKKDDIIWGMTKWEEYSLVPATGMFKIEHTDVPLSYYTGILGMPGMTAYAGLFEVGTPKKGENVLVSAASGAVGQLVGQFAKLTGCYVVGSAGTKEKVDLLKNKFGYDEAFNYKEENDLNAALKRYFPEGIDIYFENVGSKTLDAVLLNMRVHGRIPVCGMISQYNLTQPEGVINLAHIIYKRIRMQGFVVFDYYHLYTKFLEFVLPLIREGKVVYVEDIAEGLEYGPAALVGLFSGHNVGKQVVVVAHE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00158 714 Gene3D - 504 680 - -
Tsu08g00158 714 Pfam Glycosyl hydrolases family 28 42 358 IPR000743 GO:0004650|GO:0005975
Tsu08g00158 714 ProSitePatterns Polygalacturonase active site. 223 236 IPR000743 GO:0004650|GO:0005975
Tsu08g00158 714 Gene3D - 394 709 - -
Tsu08g00158 714 Pfam Zinc-binding dehydrogenase 536 669 IPR013149 -
Tsu08g00158 714 Gene3D - 17 376 IPR012334 -
Tsu08g00158 714 SUPERFAMILY Pectin lyase-like 6 369 IPR011050 -
Tsu08g00158 714 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 503 674 IPR036291 -
Tsu08g00158 714 CDD double_bond_reductase_like 395 711 - -
Tsu08g00158 714 Pfam N-terminal domain of oxidoreductase 408 491 IPR041694 -
Tsu08g00158 714 SUPERFAMILY GroES-like 403 541 IPR011032 -
Tsu08g00158 714 PANTHER - 1 367 - -
Tsu08g00158 714 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 367 - -
Tsu08g00158 714 SMART pbh1 166 192 IPR006626 -
Tsu08g00158 714 SMART pbh1 276 297 IPR006626 -
Tsu08g00158 714 SMART pbh1 193 214 IPR006626 -
Tsu08g00158 714 SMART pbh1 216 236 IPR006626 -
Tsu08g00158 714 SMART pbh1 246 267 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00158 Tsu-Chr8 1485254 1497826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00158 12 372 Glycoside Hydrolase AT2G43870 58.967 1.89e-155 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00158 K01184 K19825 aof:109838777 774.237