Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00143 ATGACGACTATGGAAAGTTTAATCGGATTAGTTAACAGAATCCAACAAGCTTGTACTAAGCTCGGTGACTATGGCGGTTCCGATAACAACAACAGCTTCTCTTCTCTATGGGAAGCTCTTCCTTCCGTCGCCGTTCTCGGTGGTCAGaGTTCAGGTAAATCTTCAGTTTTAGAAAGCATCGTTGGACGTGACTTTCTACCTAGAGGATCagGGATTGTGACGAGGCGTCCATTGGTGTTGCAGCTTCATAAGATCGATGACGGTGAAACGGAGTATGCTGAGTTTCTTCATAGACCGGGGAGAAAGATAACCGATTTTGCCATAGTACGCCAGGAAATTCAGGACGAAACTGATAGAATTACGggaaaaacaaagcaaataTCTCCTATTCCAATTCATCTTAGCATTTATTCTCCAAAAGTTGTCAACCTAACTTTGATTGATTTACCGGGGTTGACTAAAGTTGCTGTAGACGGACAGCCTGAGAGTACTGTTCAAGAAATTGAAGATATGGTTCGATCTTATGTTGAGAAGCCTAATTGTATCATACTGGCTATATCTCCAGCCAACCAGGACATAGCAACTTCCGATGCTATCAAACTTTCTAGGGAAGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTGACAAAGCTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGGAGATCTTATCGGCTGCAACATCCTTGGGTTGGTATAGTAAATCGATCTCAAGCAGATATCAACAAAAATGTTGATATGATTGTTGCTAGACGCAAGGAGGTCGAGTATTTTGAAACCAGTCCAGACTATGGACACTTAGCCAGTAAAATGGGTTCAGAGTACCTTGCAAAACTTCTCTCTGAGCACTTGGAGAGAGTAATTAAGGCACGTATACCTAGTATAACATCTTTGATAAACAAAAGCATCGAAGAGCTTGAATCAGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCGGGGGCGCAACTATACACCATCCTTGAACTTTGCCGCAAATTTGAGCGGGTATTCAAAGAGCATTTAGATGGAGGGCGGTCAGGAGGAGATAGAATATATAATGTCTTTGACAATCAGCTTCCTGCTGCTTTACGGAAGCTTCCGATTGACAAACATCTGTCTCTTCAGAATGTGAAGAGAGTGGTGTCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCTCCAGAGCAAGGTTACCGGCGACTGATTGAGGGGACTCTCAGTTTCTTTAGAGGCCCAGCCGAAGCTTCAGTTGATGCTGTTCACTTTGTTTTAAAAGAACTTGTGAGAAAATCAATCGGTGAAACTGAGGAACTTAGACGATTCCCTACTTTTCAAGCCGAACTAGCTGCAGCTTCAAATGAGGCTCTAGAGAGGTTTCGCGATGAGAGTAAGAAGACAACTATTCGGCTTGTGGATATGGAGTCTTCGTATCTTACTGTGGATTTCTTCAGGAAACTTCCTCAAGAAATGGAGAGAGCTGGTAATCCAGCTCAACCTACTAAATCAGCTCAACCTACTAATCCAGCTCAACCTAGTAAATCAGCTCAACCTACTTATCCAGCTCAACCTACTGCTGATCCATCTAATCGTGGCGGCTCAAATGAGGATCGATATGGTGATGGGCATTTTAGAAGGATTGGATCAAATGTGTTATCCTACATAGGTATGGTATCAGAAACACTCAGGATCACTATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGAGAAGCAAAACAATCATTGCTAAACTATTTCTACACACAAATAGGGAAGAAAGAGGCTAAACAGCTATCAGAGTTGTTAGACGAAGATCCTACCGTGATGGAGAGAAGACAACAATGCTTTCAAAGGCTTGAACTATATAAAGCAGCAAGGGATGAAATTGATTCGGTTTCTTGGGTCCGATGA 1953 0.425 MTTMESLIGLVNRIQQACTKLGDYGGSDNNNSFSSLWEALPSVAVLGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKIDDGETEYAEFLHRPGRKITDFAIVRQEIQDETDRITGKTKQISPIPIHLSIYSPKVVNLTLIDLPGLTKVAVDGQPESTVQEIEDMVRSYVEKPNCIILAISPANQDIATSDAIKLSREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEVEYFETSPDYGHLASKMGSEYLAKLLSEHLERVIKARIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRKFERVFKEHLDGGRSGGDRIYNVFDNQLPAALRKLPIDKHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGTLSFFRGPAEASVDAVHFVLKELVRKSIGETEELRRFPTFQAELAAASNEALERFRDESKKTTIRLVDMESSYLTVDFFRKLPQEMERAGNPAQPTKSAQPTNPAQPSKSAQPTYPAQPTADPSNRGGSNEDRYGDGHFRRIGSNVLSYIGMVSETLRITIPKAVVYCQVREAKQSLLNYFYTQIGKKEAKQLSELLDEDPTVMERRQQCFQRLELYKAARDEIDSVSWVR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00143 650 CDD DLP_1 40 306 IPR001401 GO:0003924|GO:0005525
Tsu08g00143 650 SMART dynamin_3 4 257 IPR001401 GO:0003924|GO:0005525
Tsu08g00143 650 MobiDBLite consensus disorder prediction 510 546 - -
Tsu08g00143 650 PANTHER DYNAMIN 1E-LIKE PROTEIN 3 649 - -
Tsu08g00143 650 Pfam Dynamin central region 227 495 IPR000375 -
Tsu08g00143 650 Gene3D Dynamin, middle domain 332 616 - -
Tsu08g00143 650 SMART GED_2 553 646 IPR003130 GO:0003924|GO:0005525
Tsu08g00143 650 PANTHER DYNAMIN 3 649 IPR022812 -
Tsu08g00143 650 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 66 75 IPR019762 -
Tsu08g00143 650 ProSiteProfiles GED domain profile. 558 650 IPR020850 -
Tsu08g00143 650 Pfam Dynamin family 43 218 IPR045063 -
Tsu08g00143 650 Gene3D - 4 315 IPR027417 -
Tsu08g00143 650 PRINTS Dynamin signature 207 223 IPR022812 -
Tsu08g00143 650 PRINTS Dynamin signature 65 82 IPR022812 -
Tsu08g00143 650 PRINTS Dynamin signature 188 206 IPR022812 -
Tsu08g00143 650 PRINTS Dynamin signature 230 249 IPR022812 -
Tsu08g00143 650 PRINTS Dynamin signature 40 58 IPR022812 -
Tsu08g00143 650 PRINTS Dynamin signature 138 155 IPR022812 -
Tsu08g00143 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 314 IPR027417 -
Tsu08g00143 650 Pfam Dynamin GTPase effector domain 556 646 IPR003130 GO:0003924|GO:0005525
Tsu08g00143 650 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 37 306 IPR030381 GO:0005525
Tsu08g00143 650 MobiDBLite consensus disorder prediction 506 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00143 Tsu-Chr8 1334310 1340448 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00143 - - rcu:8266673 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00143 08 1334310 1340448 Tsu08g00143 08 1334310 1340448 ECH