Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00123 ATGGCATCATCAGATGAAGAGGGTGAGATTGTTCCAGATTCTGTTGATAGTTATTGGTTTGAGAATGATAAGGCGCAGTTTGtgtcatttttaaatttgacattATTGTGGAGCGCTGATGAGGTCGAGTGTTTCTCAGAAACAAAAGTGTTTTTACGTGGCACCACTGATAATGGCCTCCAGAAAATTCACAAACAAATTACAGGATGGAGATTTGAACTTTCATGTGAGCAGCCTGTGATTTCAGTGCTTTTGAGGCAGAAATACTGGATAACACTTCTAAAACCGAGAAAATGctttgaaaatattattaggCCAGTCTTGGTCACAGTTTATTGGTTGCATTGTGTGAAACGGTATCCAGAGGAATCAAGAGTTTCTATTTTGGTCAAACTGCTGAAGGAATTTAGCTCATTTGATATTCCACCATCTGAGAATGATGTTCGAAGTCATATGACATTGATTCACGAGGCTGTCAACAGGGACACTGATTTAACAAAATCAAAGTATCTGGTTAATTTCATAGGAAAGACATGTTCAAATGAAGACTTCCATGAGGATGTTCACACTAcgaagaaaacaaaatttatagttgaatcagaggaagaggaggaagatgaGGAGGAGGACAaggaggaggtggtggtggaggaggagAAGAAGGAGGAAGAGGTGGTGGTGGAAGAGGAGAaggaggtggtggtggaggaggaggaggaggtggaGGAGGAAGATGTGGAGGAGGAAGATGTGGAGGTGGAGGACAATGACAAATCTGATGGTGAAGGCGAACTCAATGTAGATGAAGAGCAAAATATTGGATACGATACTGTTTGTGCAATTTGTGATAATGGCGGTGAAATACTTCCTTGTGAAGGAAGGTGTCTGAGATCCTTCCATGCAACCATAGAGGCTGGTAGAGATTCATTATGTGATTCTCTTGGCTACACTATTAATGAAGTTAATGCTTTTCCAAACTTCTATTGTGAAAATTGTAAACATAAGAAGCATCAATGCTTTGCATGTGGCAGACTGGGTTCATCTGATGAATCGTCTAACCCAGAGgtGTTTCCTTGTGTTACTGCAAATTGTGGTCACTATTACCATCCTAAATGTGTTGCAAGACTACTCTACCCTGGCTCTGACCCCAAACAAGAGGCAATGAGGAGGAACATTGCAACTGATAAAACATTTGTCTGTCCTCTTCATATATGTTCGTTATGCAGAAAAGGTGAAAATAGAAATGTTCATGATTTGCAATTTGCTATGTGTAGACGCTGCCCCAAGGCTTACCACCGGAAATGCTTGCCTAAGGAAATTTCCTTCACATTTGATTATTATTTGGGCATTGAACAGAGGGCTTGGGATGATCTTCTTGACAAAAGAATTTTGATGTATTGCTTGGATCATGAGATAGTTTTGGAACTTGGCACTCCTGCTAGAAACCATCTGATATTTCCTGATAAGGAAGTCAAAAGGAAATTAGTCAGtttcaaattattaaacaaaGAGAAGGTTGCTATACCATTGAAGAGAAGTTTTGAAGACCTTCCTCCTAACAAGACATTGGTGCCAAAACTAATTTTAAAGGAAAGAGTTGGCCTTCAAAGTGGCAGTTCTTCGAAAGTAGTGGAGAAACTATGCTCTAAGCCAGATACACATTTATCAACTGGACCAGATAATTTTGACAGAGctagaaaatatttgaaagttGAAACGACGTCTGCGTCAAATAGGTCATTACCAAATTATGAAAACAGAGTGcctttgaaaaataataacttgTCCTGTATTCCAAGGCAGCCTGAAGCTAGATCCCAACAGCAAAAATCTGTTggtagaattgaagaaacaagCTTAATGAAGCCTCTggtaaaaaaagtcaaaacttCACTTGAGCATAGAAAAGCAGAAATGGAAAACCGAATTTTATCTTTAATGGAAGAAGTCACGTCTAATTTGAACATGGAAGAATTTAAAAAGGACCATCAAGTCTTTTCAAGTTTCACAGAAACTGCATTTCATAAGAGCGTTACTCAAGGAAAAGTTGAAGGTTCTGTTAAGGCTATTAAAATAGCTTTGCAGAAGTTAAATGAAGGATGTAGTATTGAGGAAGCAAAAGCTATTTGTGAGCCACAAATTATTCGTCAGCTTTTTACTTGGAAGAAGCAGCTCAAGGTCTATCTTGCACCTTTTCTTCATGGCATGCGATATACTTCATTTGGTCGCCATTTCACTAAAATAGACAAGTTGAAAGAGATTGTTGAAAGGCTTCATTGGTATGTGCAAAGTGGTGACACGGTTTTGGACTTCTGTTGTGGCGCAAATGACTTCAGCTGTCTAATGAAATCAAAGCTTGACCAGACACGAAAGAACTGTTCATTTAAGAACTATGATTTATTCCAAGCTAAGAATGATTTCAACTTCGAAAAGAGAGATTGGATGAGTGTCCAGGCTGAGGAATTACCCCATGGTTCTCAACTTATCATAGGGCTAAATCCACCTTTCGGTGTAAACGGCTCTCTTGCTAACAAATTTATTAACAAGGCACTGACGTTTAAGCCAAAACTCCTTATACTTATTGTGCCAAAAGTAACAAAAAGACTTGACAGAAAGAAAGGTGGATATGATTTAATTTGGGAAGATGAGGAAATATGTTCAGGAAAGTCATTCTATCTACCTGGTTCTGTCGATACTCAACATAAGCAATTGGAAGACTGGAACCTGAAGGCGCCGCCTCTTTACCTTTGGAGTCGCCCTGACTGGACTGCTTATCACATGGGAATTGCTCAATATCATCGCCACATCAAACATGACGTgcataataataaaggaaaagaAATGATGAATTATCTTATGGAGGAGAATCATGATTGTTATCAGAATTACCCTGGGTTACATGCACCTGATAATTTTTTAAGCATATTTGATGGTGTTCCAGATGATAATGGTGACATTGTACTGCAGGATGGTGCACCTAGCTTTGCTTTATGA 2994 0.3587 MASSDEEGEIVPDSVDSYWFENDKAQFVSFLNLTLLWSADEVECFSETKVFLRGTTDNGLQKIHKQITGWRFELSCEQPVISVLLRQKYWITLLKPRKCFENIIRPVLVTVYWLHCVKRYPEESRVSILVKLLKEFSSFDIPPSENDVRSHMTLIHEAVNRDTDLTKSKYLVNFIGKTCSNEDFHEDVHTTKKTKFIVESEEEEEDEEEDKEEVVVEEEKKEEEVVVEEEKEVVVEEEEEVEEEDVEEEDVEVEDNDKSDGEGELNVDEEQNIGYDTVCAICDNGGEILPCEGRCLRSFHATIEAGRDSLCDSLGYTINEVNAFPNFYCENCKHKKHQCFACGRLGSSDESSNPEVFPCVTANCGHYYHPKCVARLLYPGSDPKQEAMRRNIATDKTFVCPLHICSLCRKGENRNVHDLQFAMCRRCPKAYHRKCLPKEISFTFDYYLGIEQRAWDDLLDKRILMYCLDHEIVLELGTPARNHLIFPDKEVKRKLVSFKLLNKEKVAIPLKRSFEDLPPNKTLVPKLILKERVGLQSGSSSKVVEKLCSKPDTHLSTGPDNFDRARKYLKVETTSASNRSLPNYENRVPLKNNNLSCIPRQPEARSQQQKSVGRIEETSLMKPLVKKVKTSLEHRKAEMENRILSLMEEVTSNLNMEEFKKDHQVFSSFTETAFHKSVTQGKVEGSVKAIKIALQKLNEGCSIEEAKAICEPQIIRQLFTWKKQLKVYLAPFLHGMRYTSFGRHFTKIDKLKEIVERLHWYVQSGDTVLDFCCGANDFSCLMKSKLDQTRKNCSFKNYDLFQAKNDFNFEKRDWMSVQAEELPHGSQLIIGLNPPFGVNGSLANKFINKALTFKPKLLILIVPKVTKRLDRKKGGYDLIWEDEEICSGKSFYLPGSVDTQHKQLEDWNLKAPPLYLWSRPDWTAYHMGIAQYHRHIKHDVHNNKGKEMMNYLMEENHDCYQNYPGLHAPDNFLSIFDGVPDDNGDIVLQDGAPSFAL 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00123 997 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 976 - -
Tsu08g00123 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 441 IPR013083 -
Tsu08g00123 997 SMART PHD_3 405 471 IPR001965 -
Tsu08g00123 997 SMART PHD_3 338 404 IPR001965 -
Tsu08g00123 997 SMART PHD_3 278 333 IPR001965 -
Tsu08g00123 997 CDD PHD2_NSD 338 403 - -
Tsu08g00123 997 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 742 844 IPR029063 -
Tsu08g00123 997 Coils Coil 629 649 - -
Tsu08g00123 997 Coils Coil 197 254 - -
Tsu08g00123 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 334 IPR013083 -
Tsu08g00123 997 MobiDBLite consensus disorder prediction 200 264 - -
Tsu08g00123 997 MobiDBLite consensus disorder prediction 197 264 - -
Tsu08g00123 997 PANTHER EDM2-LIKE PROTEIN1 1 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00123 Tsu-Chr8 1132203 1140819 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00123 - - cam:101512524 1545.79