Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g00072 | atgATGGCGAGCATCAGTATCATGGCTCTGCCACTCGTCATCTCCGTTTTCAAACCTCTCACCACCACCACCCGCCTCCACCACTCCACACTCCTACGCCGCCATCGTTTCAATACTATTCATACTCTCTCTGCAACCACCACTCCTTCAACTTCTCTCTCTcaccattcttcttcttctcctcaaAAACTTCCATCTCTTACTTTCCAACAAGCCATTCAACGTCTTCAGgaATATTGGGCTTCTGTTGGATGTTCTATAATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTCGGACCAGAACCATGGAATGTTGCGTATGCGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTAATATTGAAGCCTGATCCTGGGAATTCACAGGACCTTTTTATCCGCAGCCTTTCAGCTTTAGGTATTGATGTTACTGCACATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGATGGGAAATCTGGATGGATGGAATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCTCGTTATCACCAGTATCGGTAGAAATTACTTACGGCCTGGAGCGTATCCTCATGTTACTGCAGGGAGTTGATCACTTCAAAAAGATCAAATATTCTGACGGAATCACTTACGGAGAACTGTTCTTAGAAAATGAAAAGGAAATGAGTGCTTATTACTTAGAGCATGCCAGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCGTCGTTTACTTTCTTCAGGCCTTGCGATCCCTGCGTATGATCAGCTTCTGAAAACATCTCAtgcttttaatattttagacgCCAGAGGTTTTGTTGGAGTAACTGAGCGTGCTCGATATTTTGGTCGCATGCGCAGTTTAGCTCGCCAGTGTGCCCAACTTTGGTTGAAGACTAGGGAGATGCTTGGCTTCCCCCTTGGTTTCATCTCAGAACCTGATCAGTCTGTAGTGCCAAAGGATGTTTTGAAGGCTGCATGTAAGAAGGTTCATGATCATGCAAGAGCATTTGTTCTTGAAATTGGAACTGAAGAGTTACCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTAATATTGCAATTACTGGAACGACAGAGGTTAAAGCATGGTGAAGTGCAGGTTTTTGGCACCGCAAGGAGACTAGTGGTTTCTGTTGAAAATCTTGTCACAAAACAAACAGGACAAGAGGTTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCAAGAAGGAAATCCAACAAAGGCTGCTGAGGGTTTTTCCCGTAGATATTCTGTTCCACTGGACTTGGTATACAGAAAGGTTGATGGGAAAACAGAATATGTATATGCTCGCATAAAAGAGTCTTCAAGACATGCATTGGAGGTTTTATCTGAAGATTTGCCTGCTACTATTGCCAAAATTTCATTTCCAAAGACGATGCGTTGGAATTCACAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCTTGCATGGAGATGTTGTGGTCCCATTTTGGTTTGCTGGTGTAATGAGTGGAAACTCGTCTTGTGGCCTTCGTAATACTACTTCAGCTGTTGTCCAGATAGAAAACGCAGAATCTTATTCAGTTGCAATGAGAAATGCTGGAGTCAATGTTGTAGTTGAGGACCGTAAGAAAACAATTGTAGAGCAATCTAATACATTAGCAGAAAGTGTAAATGGCCAACTTCTGATTCCGAAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGTGATTCCAATGGACAATTGCTGCCTTACTTTATTGCTGTTGCAAATGGAGCAATTGATGAAGCTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTCGGGACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCCTCCTGGATATCAATGAAGATACACAACAAACCATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTGCCACATCAGTTGTCACTGAATTTACTGCACTTTCAGGAGTAATGGGACGTCACTATGCCCTTCGAGATGGATACTCTGAGCAGACCGCAGACGCCTTGTTTGAGATCACACTTCCTAGATTTTCTGGGGACGTAGTTCCTAAAAGCGACGCCGGTATAGTTTTAGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTCACCGCTGGTTGTCAACCTAGTTCTACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGACTCGTGCAATTGTTGGTGGAAAAGGATAAAAACCTAGACTTTAAAGAAGCTCTCGAACTTGCTGCAGATGTCCAGCCAATCAAAGTAAATCCTCAAGTAATAGACGAAGTGCGTCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTAGACAAGGGGGTGAGTGCAGAAATTGTTCGTTCTATCCTTGCAGAGAGAGCTAATTTTCCCTGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGCCCAACTAGAATTGTCCGTGGGAAGGAAATTGAGTTTCATACGGAGGTGGATGAGTATGCCTTCGAGACAAACGAAGAGAGAGTTTTGTGGAACGCGTTTTCGTCAGTTAAAAAGAATATCAATCCTGGTCTTGACATCGAcgattttgttgaaatttcatCCCAACTTATACAACCACTTGACGATTTCTTCAATAATGTCTTTGTAATGGTGGATGATGCTAAGATCAGAAATAACAGGCTAGCTCTGCTAAAAGGAATTGCTGAACTACCTAAAGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA | 3192 | 0.4154 | MMASISIMALPLVISVFKPLTTTTRLHHSTLLRRHRFNTIHTLSATTTPSTSLSHHSSSSPQKLPSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYAEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLSLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHLQKHFDFFEEESRRLLSSGLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDQSVVPKDVLKAACKKVHDHARAFVLEIGTEELPPQDVVDASKQLKDLILQLLERQRLKHGEVQVFGTARRLVVSVENLVTKQTGQEVEVRGPPVSKAFDQEGNPTKAAEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFWFAGVMSGNSSCGLRNTTSAVVQIENAESYSVAMRNAGVNVVVEDRKKTIVEQSNTLAESVNGQLLIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDSNGQLLPYFIAVANGAIDEATVRKGNEAVLRARYEDAKFFYELDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTKLSCLLDINEDTQQTIREAASLAMSDLATSVVTEFTALSGVMGRHYALRDGYSEQTADALFEITLPRFSGDVVPKSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKDKNLDFKEALELAADVQPIKVNPQVIDEVRQFVTRRLEQFLVDKGVSAEIVRSILAERANFPCLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKEIEFHTEVDEYAFETNEERVLWNAFSSVKKNINPGLDIDDFVEISSQLIQPLDDFFNNVFVMVDDAKIRNNRLALLKGIAELPKGIADLTLLPGF | 1063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00072 | 1063 | PANTHER | GLYCYL-TRNA SYNTHETASE | 379 | 1063 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | CDD | GlyRS_alpha_core | 68 | 346 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | SUPERFAMILY | Class II aaRS and biotin synthetases | 68 | 346 | IPR045864 | - | |
| Tsu08g00072 | 1063 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 67 | 347 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 121 | 136 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 142 | 162 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 222 | 237 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 307 | 323 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 173 | 197 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 199 | 219 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | SUPERFAMILY | HD-domain/PDEase-like | 714 | 843 | - | - | |
| Tsu08g00072 | 1063 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 736 | 1025 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 379 | 1060 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 271 | 350 | - | - | |
| Tsu08g00072 | 1063 | Gene3D | Bira Bifunctional Protein; Domain 2 | 53 | 270 | IPR045864 | - | |
| Tsu08g00072 | 1063 | Pfam | Glycyl-tRNA synthetase beta subunit | 382 | 926 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 68 | 342 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | Pfam | Glycyl-tRNA synthetase alpha subunit | 69 | 346 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 68 | 352 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Tsu08g00072 | 1063 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 380 | 1060 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g00072 | K14164 | - | gmx:100787365 | 1785.77 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu08g00072 | 08 | 644986 | 658684 | Tsu08g00072 | 08 | 644986 | 658684 | ECH |