Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00071 ATGCAAATTGCACCATCGTCAACAATGGACAGCGATGAAGAAGAAGTTGCTGAAGAAGTTGAAGCCATGAAAGCTGTTTATGAAACTGATTGTCTCATTCTCCGTTCAATCCCTCCTCACTTTCATCTATCCCTCAAACCCAGAACCGCTGATGTTTCCTCTGACCAGTTTGTAGAAATTGTTCTTGAGGTACGAGCAACCCCACAGTATCCAAAAGAACCACCCTTTGTTGCCCTTGTGGATTCCAAGGGTCTGGATCAACAAAGACAAAAGCATTTATTGAATCATATAGAAAGTAAAGCCAATGAGCTCTCCCCTGGCTTAATGCTTGTCGCTCTCTGTGAGgaAGCTGCAGAAAAACTTTCAGCTATGAATCATCCCGATGGTGATTGTCCACTGTGTTTATTCCCATTGGTCACAGAAGATCACCAAAGTGAAACCTTGCCTTTTATGAAGTTAATGTCTTGCTTTCATTGTTTTCACCGTGAATGTATCATTAGATGGTGGAATTGGATTCAGAGTTCTAAACAAACAGGCTCTGCCAATTCAAATAATGCAACTGCTCATCGTAACCGGGataatCATGAAAAATTGGATGAGGGTGTTGGAAACTGCCCTGTCTGTCGCAAACCTTTTCATGCAAAAGATTTGGACCATGTGCTTGACCTAGTTGGCTCACATTCTTTCAGAGTGAGTGTGAATAATGATGAAATCGATAATGACGAGAAAATCCTTCAATCTGAGCAAGAGATAATCCGAAAGCAGAGGTTTGAAGCCATCTTAAGTTTACAAAAGGAGAACAATGGTTTGATTGAACCCAAAAAAGATATAGTAATATTGCCGGGGATGTATCTTCAACAACCGGTTGTAGTGCCCGACTCCACGACAAACAAGGAGCCTGACGAGGTTGAGCAACAAGAAAGAGATCCACCTGCAGTTGCGTCAGGAAAACACGCCAGTGGAACCTCAAACGGACCTAGTTCTAGCGGGAACAGAAATTTTGGTGCAACGAGGTATAGACCAAGAAGTGATAATCACTCTAGTTCAACTGCAAGACATTCAAGAAAATCAGTCCAACAACAACAGTGGGTTAGAAGAGATAATCCTAGCAATAAGCAATAA 1122 0.418 MQIAPSSTMDSDEEEVAEEVEAMKAVYETDCLILRSIPPHFHLSLKPRTADVSSDQFVEIVLEVRATPQYPKEPPFVALVDSKGLDQQRQKHLLNHIESKANELSPGLMLVALCEEAAEKLSAMNHPDGDCPLCLFPLVTEDHQSETLPFMKLMSCFHCFHRECIIRWWNWIQSSKQTGSANSNNATAHRNRDNHEKLDEGVGNCPVCRKPFHAKDLDHVLDLVGSHSFRVSVNNDEIDNDEKILQSEQEIIRKQRFEAILSLQKENNGLIEPKKDIVILPGMYLQQPVVVPDSTTNKEPDEVEQQERDPPAVASGKHASGTSNGPSSSGNRNFGATRYRPRSDNHSSSTARHSRKSVQQQQWVRRDNPSNKQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00071 373 SUPERFAMILY UBC-like 13 121 IPR016135 -
Tsu08g00071 373 MobiDBLite consensus disorder prediction 292 373 - -
Tsu08g00071 373 Gene3D Ubiquitin Conjugating Enzyme 4 126 IPR016135 -
Tsu08g00071 373 Pfam RWD domain 14 120 IPR006575 GO:0005515
Tsu08g00071 373 SMART RWD2001b 18 124 IPR006575 GO:0005515
Tsu08g00071 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 223 IPR013083 -
Tsu08g00071 373 MobiDBLite consensus disorder prediction 317 344 - -
Tsu08g00071 373 SUPERFAMILY RING/U-box 124 215 - -
Tsu08g00071 373 ProSiteProfiles RWD domain profile. 18 124 IPR006575 GO:0005515
Tsu08g00071 373 PANTHER RING FINGER PROTEIN 25 12 364 IPR039133 GO:0061630
Tsu08g00071 373 MobiDBLite consensus disorder prediction 352 373 - -
Tsu08g00071 373 SMART ring_2 131 208 IPR001841 -
Tsu08g00071 373 ProSiteProfiles Zinc finger RING-type profile. 131 209 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00071 K10640 - gmx:100791789 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00071 08 638831 643291 Tsu08g00071 08 638831 643291 ECH