Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04383 atggGGACTGAAAACCCGGGTCGTCCCAACTTTCCTTCGAGGCCTAGTTCCTTGCCTTTTCCTCCTGCACAGACCATGACTACACCTTTTTCATCAATGGGTCCTGTGGCTGGATCAGAGCCTCCTTCTTTCCGACCTCCTCCTCCTGCATCTTCTCAAACGCCCACACCGTTTTCATCGTCTGGACCTGCTGTTAGACCAGGAGCACCCGGTTTTAGACCTACACCACCAGGCAGGTTCAATGATCCATCAGTGCCTCCTCCACCATCATCCAATGTTCCGCCAGCGCAGGCTGCTGGATCATTCCAGCATTTTCCAGCAACGCCTTTTTCCTCGACAGTACAGCCTCCTCTGACACGGCCTCCACCTTTGGGACAACCATCAATTCAACAGCATGCAAGTCAAGCACCTCCCTTTCCCTCATCTCTTCCACCACAGCCACAGATGCCCTATGTTCAAATGGGGTCTCCACCTATGGGTTCAAATGTTCCTCCTCCTCAATTTCAGCCGTCAGTTCCTGGATATGCCCGTATGCAGCCTGGTGCCGAAATGCAACCTCCACCTTTGCACTCCTCTATTCATGCAAATCAAGGAAATTACGGACCTGCACCGCCTGCAGCAGCGTCTCCCTTTTTACCCCATCAAGGAGGCTATGCTTCATCACTACCCGTGGCTACTCCAATAGGTGTCCAGTCAACACAGCAACCAGGATATGTACCCCCTACTGGTGCCATTCAGGGCTTGACAGAAGACTTCAGTTCACTCACAATGCAAACCCGTCCTGGAACAATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCGTTGGAAGGTGATGTGGAGCCGAAGAATTTGACCGAGATGTTTCCCACAAATTGCAAACCCAGATATCTGCGATTCACTACCGGTGCAATTCCTAGCTCTCAATCCTTAGCTTCAAGATGGCAACTGCCTCTTGGAGCAGTTGTATGCCCACTTGCTGAATCTCCAGATGGGGAAGAGGTGCCTATAATTAGTTTTGCTCCAGCTAGTGTTGTGCGCTGTAGAAGATGCCGCACATATGTGAACCCTTATGTGACATTTACAGAAGCTGGAAGAAAGTTCCGGTGCAATGTATGCGCGTTGCTTAATGATGTTCCTAGTGAATATTATGCACAGTTAGATGCCACTGGAAAAAGAGTTGATTTGAATCAACGACCCGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTTTTCCTCATTGATGTTTCCATATCTGCTGTTAGAAGTGGCATGATTGAGGTTGCGGCCCAAACTATCAAGTCCTGCTTAGATGAACTGCCTGGCTTTCCCCGGACACAAATTGGGTTTGCAACTTTTGACAGCACTATACATTTTTATAACTTGAAGTCAACCTTGACTCAACCACAGATGTTTGTGGTCTCAGATCTCGATGACATGTTTATTCCGCTCCCAGACGATCTTCTTGTTAACTTATCTGAGTCAAGAAGTGTGGTGGAAGCCTTCCTAGATAGTTTGCCAACTATGTTTCAAGATAATGTTAATCTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCTTTCATGGTTATGGGTCAACTTGGAGGgaaattgttaatttttcaaaacacactTCCATCTCTTGGTGTTGGTCGCTTGAAGTTACGGGGAGATGATTCTCGTGTTTATGGGACAGATAAAGAACATGGACTGAGACTGCCCGAAGATccattttataagcaaatggCTGCTGAGTTTTCCAAGTACCAAATCTCAGTAAATGTCTATGCATTCAGCGACAAGTACACTGACATAGCCTCCTTAGGAACTTTGGCGAAGTACACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATACATGGGGAGAAATTGAGTCATGAATTAAGGAGAGACCTCACTAGAGAGACTGCATGGGAAGCTGTAATGCGTATCAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTCATGCTAAGGTCCACAGATTTGTTGGCGCTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACTCTTTATTTTCAAGTTGCTTTGCTTTATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTGCCGGTAGTTACAGATTTGGCGGATATGTATCGCCTGGCTGATACTGGAGCAGTTGTCTCTCTATTTTCTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGAGTGCTGTGCAACTAAGAATTGTGAAAGCCCTCAAGGAGTACCGAAATCTTTATGCCGTGCAGCATCGCTTGGCTAACAGAATGATATATCCCGAGTCTTTAAAGTTCCTAATGTTGTATGGATTAGCTCTTTGTAGATCAACAGCTCTACGTGGAGCGTATGGCGATGTTCCACTGGATGATCGATGTGCAGCAGGACATACAATGATGACTCTACCTATAAAAAGATTGTTAAAATTTCTCTATCCTAGCTTGATTCGAATTGATGAATATCTTTTGAAGCCATCGGTACAAGCTGATGATTTCAAAAGTATCGATAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGGGGcctttatatatatgatgatggCTTTCGGTTTATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCAAAGAATTTACTTGGGGCAGACTTTGCAGCGGAACTATCAAAGGCCACTCTCAATGAGCATAATAATGAAATGTCAAGGAGATATCCCGACAAGTGCAACactcataatatatatatagATTCTTCCCTTGCTAGATAA 2916 0.4427 MGTENPGRPNFPSRPSSLPFPPAQTMTTPFSSMGPVAGSEPPSFRPPPPASSQTPTPFSSSGPAVRPGAPGFRPTPPGRFNDPSVPPPPSSNVPPAQAAGSFQHFPATPFSSTVQPPLTRPPPLGQPSIQQHASQAPPFPSSLPPQPQMPYVQMGSPPMGSNVPPPQFQPSVPGYARMQPGAEMQPPPLHSSIHANQGNYGPAPPAAASPFLPHQGGYASSLPVATPIGVQSTQQPGYVPPTGAIQGLTEDFSSLTMQTRPGTMDPLFDAKELPRPLEGDVEPKNLTEMFPTNCKPRYLRFTTGAIPSSQSLASRWQLPLGAVVCPLAESPDGEEVPIISFAPASVVRCRRCRTYVNPYVTFTEAGRKFRCNVCALLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVAAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNLKSTLTQPQMFVVSDLDDMFIPLPDDLLVNLSESRSVVEAFLDSLPTMFQDNVNLESAFGPALKAAFMVMGQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLSHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTLYFQVALLYTASCGERRIRVHTMAVPVVTDLADMYRLADTGAVVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSTALRGAYGDVPLDDRCAAGHTMMTLPIKRLLKFLYPSLIRIDEYLLKPSVQADDFKSIDRRLPLTGESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLNEHNNEMSRRYPDKCNTHNIYIDSSLAR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04383 971 Pfam Sec23/Sec24 zinc finger 347 384 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g04383 971 Gene3D - 292 405 - -
Tsu07g04383 971 SUPERFAMILY Zn-finger domain of Sec23/24 339 420 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g04383 971 Gene3D Severin 866 954 IPR029006 -
Tsu07g04383 971 PANTHER OS04G0129500 PROTEIN 28 957 - -
Tsu07g04383 971 Pfam Sec23/Sec24 beta-sandwich domain 663 747 IPR012990 -
Tsu07g04383 971 MobiDBLite consensus disorder prediction 40 54 - -
Tsu07g04383 971 Pfam Sec23/Sec24 helical domain 758 861 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tsu07g04383 971 MobiDBLite consensus disorder prediction 20 34 - -
Tsu07g04383 971 Pfam Gelsolin repeat 893 944 IPR007123 -
Tsu07g04383 971 MobiDBLite consensus disorder prediction 267 286 - -
Tsu07g04383 971 Pfam Sec23/Sec24 trunk domain 421 657 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tsu07g04383 971 Gene3D - 294 746 - -
Tsu07g04383 971 SUPERFAMILY Helical domain of Sec23/24 758 865 IPR036175 GO:0006886|GO:0006888|GO:0030127
Tsu07g04383 971 MobiDBLite consensus disorder prediction 69 94 - -
Tsu07g04383 971 CDD Sec24-like 421 662 IPR041742 GO:0006886|GO:0006888|GO:0030127
Tsu07g04383 971 PANTHER SEC24-RELATED PROTEIN 28 957 - -
Tsu07g04383 971 SUPERFAMILY beta-sandwich domain of Sec23/24 185 756 - -
Tsu07g04383 971 Gene3D Sec23/Sec24 helical domain 747 865 - -
Tsu07g04383 971 Gene3D von Willebrand factor, type A domain 423 660 IPR036465 -
Tsu07g04383 971 MobiDBLite consensus disorder prediction 138 152 - -
Tsu07g04383 971 MobiDBLite consensus disorder prediction 1 167 - -
Tsu07g04383 971 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 875 941 IPR036180 -
Tsu07g04383 971 SUPERFAMILY vWA-like 421 661 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04383 Tsu-Chr7 49087744 49095429 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04383 K14007 - gmx:100791083 1543.1