Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04356 ATGAAAATGGCTCCAACAATTCTGCCCCTGGTTACCTTATTTTTAGCTTTCTCCGCTTCTTATCTCTCGATCGGTGAGGCGGAAACAGATCAGCTTAATGGACTCAAGCTTAATTCTCATATTCTTCAGGAGTCTATCGCTAAACAGATTAACGAAAACCCAGGGGCAGGATGGAAGGCTGCTATTAATCCCCGTTTCTCCAATGTTACGGTTGGACAATTTAAGCGCCTTCTTGGAGTCAAGCAAACACCTAGGAATGAACTGAGGAGTACACCTGTTGTAACTCATCCAAAATCCTTAAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCACAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTATCTGATCGTTTTTGTGTTCATTTTGACGTGAATGTATCCCTCTCTGTTAATGACCTTCTTGCATGCTGTGGATTTCTTTGTGGGTCTGGCTGTGATGGAGGGTATCCCATTTATGCGTGGCGATACTTGGCAAGCCATGGTGTCGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGATGTTCTCATCCTGGTTGTGAGCCAGCATATCGAACTCCCAAGTGTGTTAAAAAGTGTGTAAATGGAAACCAACTTTGGAAGAAGTCAAAGCACTATAGTGTCAAAGCATATAGGGTAAACTCTGATCCCCAAGATATCATGGCAGAAGTTTATAAGAATGGGCCGGTTGAAGTTGCATTCAGTGTTTATGAGGATTTCGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTTCTGCACTTGGCGGTCACGCAGTAAAACTGATCGGATGGGGAACAAGTGATGAAGGGGAAGACTATTGGCTTCTTGCAAATCAGTGGAATACAAACTGGGGAGATGATGGTTACTTCAAGATCAAGAGAGGGACAAATGAATGTGGGATTGAAGAGGATGTTACTGCTGGTTTGCCTTCTACCAAAAATATTGTAAGAGAGGTGACTGACATGGATGCTGATGCTGATGTTTCATTCTGA 1077 0.428 MKMAPTILPLVTLFLAFSASYLSIGEAETDQLNGLKLNSHILQESIAKQINENPGAGWKAAINPRFSNVTVGQFKRLLGVKQTPRNELRSTPVVTHPKSLKLPKNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCVHFDVNVSLSVNDLLACCGFLCGSGCDGGYPIYAWRYLASHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVNGNQLWKKSKHYSVKAYRVNSDPQDIMAEVYKNGPVEVAFSVYEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEEDVTAGLPSTKNIVREVTDMDADADVSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04356 358 CDD Peptidase_C1A_CathepsinB 103 336 - -
Tsu07g04356 358 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Tsu07g04356 358 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 124 135 IPR000169 -
Tsu07g04356 358 Gene3D Cysteine proteinases 34 344 - -
Tsu07g04356 358 PANTHER CATHEPSIN B-LIKE PROTEASE 3 28 344 - -
Tsu07g04356 358 Pfam Papain family cysteine protease 102 335 IPR000668 GO:0006508|GO:0008234
Tsu07g04356 358 Pfam Peptidase family C1 propeptide 42 84 IPR012599 GO:0004197|GO:0050790
Tsu07g04356 358 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 344 - -
Tsu07g04356 358 SMART pept_c1 102 337 IPR000668 GO:0006508|GO:0008234
Tsu07g04356 358 SUPERFAMILY Cysteine proteinases 47 338 IPR038765 -
Tsu07g04356 358 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Tsu07g04356 358 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Tsu07g04356 358 PRINTS Papain cysteine protease (C1) family signature 124 139 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04356 Tsu-Chr7 48827251 48831433 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04356 K01363 - gmx:100778103 664.07