Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04342 atgtcattttcctttatttcccgcttattattttgttttactgtttttatCTATTCTACATCTTTTGAAGTTGAATCATGGGGCACCCCTATTATACCAATCTCATCTCTAATTACTAAGAGCCTATATGATACAATTTTCCTACACAAAGACAACACTGCATGTCCTGCAAAAAACTTTTACCCTTATCAATCCTTCATTCAAGCTACTAAATATTTCCCTCAATTTGGTACTACAGGTTGTTTGGACACAAGAAAACGTGAGATAGCTGCTTTTCTTGCTCAAATTTCACATGAAACAACTGGTGGGTGGGAAACTGCACCTGATGGACCATTTGCTTGGGGATTATGCTTCAAAGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCTACTAATAAAGATTGGCCTTGTTTTGAAGATAAAAGTTACAAAGGAAGAGGTCCCATTCAACTTTCATGGAATTACAACTATGGACCAGCAGGGAAGGCCTTAGGATTTGATGGGCTGAAGAATCCAGAAATAGTATCAAACAATTCTGTGATTGCTTTCAAAACTGCTCTATGGTTTTGGATGACAGAGAGAAAACCAACACCTTCTTGTCACAATGTTATGGTTGGAAAATATGTGGCAACAAAAGATGACATAGCTGCTAATCGCACTGCTGGTTTTGGCTTAGTAACAAACATAATCAATGGTGGATTGGAATGTGGAATTCCAAATGATGAAAGAGTTAATGATCGTATTGGATTTTTTAAGAGATATACCAAGTTGTTCAATGTGGATACTGGACCTAACTTGGATTGTGCATATCAAAAATccttataa 828 0.3442 MSFSFISRLLFCFTVFIYSTSFEVESWGTPIIPISSLITKSLYDTIFLHKDNTACPAKNFYPYQSFIQATKYFPQFGTTGCLDTRKREIAAFLAQISHETTGGWETAPDGPFAWGLCFKEEISPQSNYCDSTNKDWPCFEDKSYKGRGPIQLSWNYNYGPAGKALGFDGLKNPEIVSNNSVIAFKTALWFWMTERKPTPSCHNVMVGKYVATKDDIAANRTAGFGLVTNIINGGLECGIPNDERVNDRIGFFKRYTKLFNVDTGPNLDCAYQKSL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04342 275 Gene3D Endochitinase, domain 2 120 178 - -
Tsu07g04342 275 SUPERFAMILY Lysozyme-like 34 274 IPR023346 -
Tsu07g04342 275 ProSitePatterns Chitinases family 19 signature 2. 182 192 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tsu07g04342 275 PANTHER CHITINASE-RELATED 12 274 - -
Tsu07g04342 275 PANTHER OS05G0138200 PROTEIN 12 274 - -
Tsu07g04342 275 CDD chitinase_GH19 38 269 - -
Tsu07g04342 275 Gene3D - 41 274 - -
Tsu07g04342 275 PIRSF Endochitinase 9 275 IPR016283 GO:0004568|GO:0005975
Tsu07g04342 275 Pfam Chitinase class I 37 269 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04342 Tsu-Chr7 48699567 48701159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04342 33 273 Glycoside Hydrolase AT4G01700 74.689 1.29e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04342 - - gmx:100784196 485.723