Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04339 ATGGCTAATAACCCAACACAACCTAATGTTGGGTTCATCCCTTCAAACCcagaagaacaagaacaagacaGACAAACTTCAACTCCAATTCATCCTCCTCCCCCTCCTCCAATTTTTGCAGCACCACCTAGATTTCCTCCACCAATATTACATTTACAGAAAGATCAAGGTTCTATTCATTCTGCAAATGGCAGTCCAGTTCCTCACTTGAGCACCCCTCCTGGACCTCCTGTCTTTACATCACCTGTTCGTCCGGCCGCTGTTCCTTTTCGAACATCACCCGTTTCGCCTCAGCCGCCTGCTCTTTCTACTGCATCTTCTTTGCCAACCTCATCCTCCCCGGCTTACTCAAATGGATCATTCGACTTGCAGTCACAAGCTTCTGGTGGCTTAGAGGATCACATTCCACTTGGGGAGTCATCATCCTTTGTACTTTTTTCAGCTCATAAGGTATTGAAGCAGAAGAAACAAGCGAATGTGCCTAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTGTCAACAGGTCCCCAGGTAATACAGCGTGATCCTCATCGCTGTCAAAGCTGTGGGGCATATGCAAATATATATTGCAATATACTGCTTGGATCAGGCCAGTGGCAGTGTGTTATTTGTCGAAAACTGAATGGAAGTGATGGTGAGTACATTGCACATAGCAAGGAAGATCTTCACAGATTTCCAGAATTATCTTCACCAATGGTTGACTTTGTTCAAACTGGGACCAAGAGACCTGGTTATGTTCCAGTTTCCGATTCCAGAATGTCTGCACCAGTAGTTCTTGTAATAGATGAATGTTTAGATGAACCTCACTTACACCATCTTCAGAGCTCTTTGCATGCATTTGTTGATTCTCTTCCTCCAACAACAAGATTAGGAATTATACTATACGGCCGTACTGTATCGGTGTATGACTTTTCAGAAGAGTCAGTTGCATCTGCTGATGTGCTTCCCGGGGACAAGTCCCCAGGTCAAGATTCTTTGAAAGCTTTGATTTATGGTACCGGTATATATTTGTCACCAATGCATGCTTCACTGGCTGTAGCGCATTCTATATTTTCATCATTGAGACCATATAAGTTGAATGTACCAGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTCGCTATAATTCAGGGCCCATCTGCCGATCTGTCCCGAGGGGTAGTCAAAAGATCAGGGGGTAATAGTAGAATTATTGTCTGTGCTGGTGGTCCAAACACTTATGGGCCTGGATCTGTGCCTCATTCTTTTAACCACCCTAATTATCCTTATATGGAAAAGACAGCATTAAAATGGATGGAGAATTTAGGTCGCGAGGCTCATCGACACAATATATTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTTCatgatgattttggagaagCCTTCGGCGTTAATTTACAAAGGGCATCTGCCAGATCAGCAGGCTCCCATGGATTGTTAGAATTACGGACATCAGATGATATTCTCATTACGCAAGTTGTGGGTCCGGGGGAAGAGTCGCATGTAGACACCCATGAAACATTTAAAAATGACACCGCTCTTTATATTCAAATGCTAAGCGTTGAAGAGACACAGAGCTTTTCTCTCTCCATGGAAACCAAAGGAGATATCAAAAgcgattttgtttttttccagTTTGCAATTCAGTATTCAAATGTGTATCAGGCGGATGTCTCAAGGGTCATTACTGTTAGATTACCAACAGTAGATAGTGTTTCGGGATATCTTGAGAGTGTTCAGGATGAAGTGGCTGCTGTCCTCATTGCAAAGAGAACTCTGTTGCGAGCCAAAAACCATTCTGTTGCTGTTGATATGCGGGCTACAATAGATGAAAGAATCAAAGATATTGGTCTAAAATTTGGCTCTCAATTACCCAAATCAAAACTTCATTGCTTCCCAAAGGAGCTGTCTCTCTTACCGGAGCTCCTTTTCCATCTCAGGAGAGGCCCACTATTGGGATGCATTATTGGCCATGAAGATGAAAGGTCTGTGCTGAGGAACTTGTTTCTAAATGCATCCTTTGATCTATCGCTCAGAATGGTGGCTCCGCGATGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAATCTGATACCGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGCTGGGTGCTGAACTTGTAGCTGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTGGCTGAAGAACTGACCGAATTCCGTTTTCCAGCTCCTCGGATCCTAGCATTCAAGGAGGGTAGCTCGCAGGCTCGATATTTTGTGTCGCGTCTCATACCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGGTTCCCACAACTAAGAACATTAACATCAGAACAAAGAACAAAGCTGAAAAGCAGTTTTGTTCACTTCGACGATCCAAGTTTCTGTGAATGGATGCGAAGTTTAAAGAAAGTGTTCAGTGTGAGAGAGTCCATTCAATTCGCCACCATCGCTCTTGCACGCTCCATTCTCCCTCGCCTTTTCTCAAACAGGATCAGGTGCTCCTCCTTCACAATGGCGGGTACCGATGCCACAAAAAATCAATCCGGCGGCGGAGGTGCAAAACAACCAAAACAACCAAAaccacaaaaacaacaacaatctgGTGGTGGAGGGAAGAAGAAGGAAGTTAAGAAAGAAACTGGATTAGGTTTAACTAATAAGAAGGCTGAGAATTTCGGAGAGTGGTATTCTGAGGTTGTTGTTAATGGTGAAATGATTGAGTACTATGACATTTCTGGTTGCTATATTCTTAGACCTTGGTCAATGGCTATTTGGGAGATTATGCAAGCGTTTTTTGATCCAGAaataaagaagatgaagatcaaGAACTGCTACTTCCCAGTGTTTGTTTCTTCTACTGTTCTTGAAAAGGAGAAGGACCATATCGAGGGTTTTGCTCCAGAGGTGGCTTGGGTGACAAGATCTGGAAAATCTGAGCTAGAGATTCCTATTGCTATTCGTCCGACTAGTGAAACTGTTATGTATCCATACTACTCTAAGTGGATAAGGGGACACCGTGACTTACCACTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCTACACCATTCATCAGGCACTACTTTTTTTTCACCATTCGCGAGTTTCTCTGGCAAGAAGGACACACTGCTTTTGCTACTAAGGAGGAAGCAGATACAGAGGTTCTTGAGATTTTGGAATTATATAGGCGTATATATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCGGGTGGACTTTACACTACCAGTGTTGAGGCCTTTATTCCAAATACTGGTCGTGGCATTCAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCAACGATGTTTGACATAAACTATGAAAATGAGAAGGGAGAGAGAGCAATGGTCTGGCAGAACTCATGGGCCTACAGTACCCGAACTATTGGGGTGATGGTGATGGTTCATGGTGATGATAAAGGATTGGTGCTGCCTCCTAAAGTAGCATCAGTTCAAGTTATTGTGATTCCTGTGCCTTACAAAGATGCTGATACTCAAGGAATCTTGGATGCCTGTTCTGCAACTGTGAATGCGTTGTTGGAAGCAGGAATTCGCGCCGAGTCAGATTCCAGAGATAACTATTCTCCCGGATGGAAGTATTCTCAGTGGGAAATGAAAGGTGTTCCCCTGAGGATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTTCGCGCTGTTCGTCGTGATAATGGAGCAAAAATAGACATTGCTAGTGCTGATATGGTTGAGGAAATAAAGAAGTTGCTTGATAATATTCAACAGAATCTGTTTGATGTTGCAAAACAAAAACGAGATGAGTGTATTCAGGTCATACATACTTGGGACGAGTTTATGGAAGCCTTAACTCAAAAAAAGATGATCCTAGCTCCTTGGGCTGATGAGAAGGAGGTTGAAGAAGATGTCAAAGCAAGGACAAAGGGTGAGATTGGAGCAGCAAAGACACTCTGCAGTCCCTTTGATCAGCCGGAACTCCCCGAAGGAACCATATGCTTTGCGTCCGGCAAGCCTGCAAAGAAGTGGTCATACTGGGGCAGAAGTTACTAG 4284 0.4309 MANNPTQPNVGFIPSNPEEQEQDRQTSTPIHPPPPPPIFAAPPRFPPPILHLQKDQGSIHSANGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPVSPQPPALSTASSLPTSSSPAYSNGSFDLQSQASGGLEDHIPLGESSSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHSKEDLHRFPELSSPMVDFVQTGTKRPGYVPVSDSRMSAPVVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFSEESVASADVLPGDKSPGQDSLKALIYGTGIYLSPMHASLAVAHSIFSSLRPYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNILVDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETKGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNHSVAVDMRATIDERIKDIGLKFGSQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTSEQRTKLKSSFVHFDDPSFCEWMRSLKKVFSVRESIQFATIALARSILPRLFSNRIRCSSFTMAGTDATKNQSGGGGAKQPKQPKPQKQQQSGGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPVFVSSTVLEKEKDHIEGFAPEVAWVTRSGKSELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRHYFFFTIREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFATMFDINYENEKGERAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACSATVNALLEAGIRAESDSRDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADMVEEIKKLLDNIQQNLFDVAKQKRDECIQVIHTWDEFMEALTQKKMILAPWADEKEVEEDVKARTKGEIGAAKTLCSPFDQPELPEGTICFASGKPAKKWSYWGRSY 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04339 1427 Pfam Sec23/Sec24 beta-sandwich domain 512 603 IPR012990 -
Tsu07g04339 1427 SUPERFAMILY Class II aaRS ABD-related 1219 1346 - -
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 28 49 - -
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 898 925 - -
Tsu07g04339 1427 Pfam Sec23/Sec24 helical domain 617 713 IPR006900 GO:0006886|GO:0006888|GO:0030127
Tsu07g04339 1427 Gene3D Severin 733 829 IPR029006 -
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 69 83 - -
Tsu07g04339 1427 Gene3D - 176 239 - -
Tsu07g04339 1427 SUPERFAMILY vWA-like 267 499 IPR036465 -
Tsu07g04339 1427 Gene3D von Willebrand factor, type A domain 266 511 IPR036465 -
Tsu07g04339 1427 Hamap Proline--tRNA ligase [proS]. 941 1427 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 97 127 - -
Tsu07g04339 1427 SUPERFAMILY Class II aaRS and biotin synthetases 946 1218 IPR045864 -
Tsu07g04339 1427 Pfam Sec23/Sec24 zinc finger 186 224 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g04339 1427 Pfam Anticodon binding domain 1231 1327 IPR004154 -
Tsu07g04339 1427 Pfam Prolyl-tRNA synthetase, C-terminal 1354 1427 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 1 27 - -
Tsu07g04339 1427 TIGRFAM proS_fam_I: proline--tRNA ligase 942 1427 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 53 859 IPR037364 -
Tsu07g04339 1427 Pfam Sec23/Sec24 trunk domain 268 494 IPR006896 GO:0006886|GO:0006888|GO:0030127
Tsu07g04339 1427 SUPERFAMILY Zn-finger domain of Sec23/24 176 248 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Tsu07g04339 1427 Gene3D Bira Bifunctional Protein; Domain 2 941 1224 IPR045864 -
Tsu07g04339 1427 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 53 859 - -
Tsu07g04339 1427 SMART ProRS_C_1_2 1354 1427 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 718 860 IPR036180 -
Tsu07g04339 1427 CDD gelsolin_like 718 809 - -
Tsu07g04339 1427 SUPERFAMILY beta-sandwich domain of Sec23/24 21 614 - -
Tsu07g04339 1427 SUPERFAMILY C-terminal domain of ProRS 1350 1427 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 CDD ProRS_core_arch_euk 947 1214 IPR033721 -
Tsu07g04339 1427 Gene3D - 1348 1427 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 SUPERFAMILY Helical domain of Sec23/24 616 716 IPR036175 GO:0006886|GO:0006888|GO:0030127
Tsu07g04339 1427 CDD trunk_domain 260 503 - -
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 898 936 - -
Tsu07g04339 1427 Coils Coil 1322 1342 - -
Tsu07g04339 1427 MobiDBLite consensus disorder prediction 1 127 - -
Tsu07g04339 1427 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 980 1224 IPR006195 -
Tsu07g04339 1427 Gene3D Sec23/Sec24 helical domain 605 724 - -
Tsu07g04339 1427 PRINTS Prolyl-tRNA synthetase signature 999 1017 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 PRINTS Prolyl-tRNA synthetase signature 1040 1051 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 PRINTS Prolyl-tRNA synthetase signature 1070 1078 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Tsu07g04339 1427 CDD ProRS_anticodon_zinc 1220 1427 - -
Tsu07g04339 1427 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 1040 1212 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu07g04339 1427 Gene3D - 1225 1345 IPR036621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04339 Tsu-Chr7 48662818 48674241 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04339 - - gmx:100781518 1491.09