Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04324 ATGCAAATCGATTCAGCCAAAGAAGCAACAATGGTGACGGAAGAAGAAAATCAACGCTTAACTGAATGGCGTCTTCACCGTGGCCCTTACCTTGGCGACATCTCAGCTCTCTGTTTTCTTCATCGTCCCAATcattctcttcctcttcttctagCTGGTTTGGGTTCGGAAATTCTGTTATACGATTTAGAACTTGGAAAGATAATGAGATCGTTTTCGGTTTTTGATGGAGTTCGTGTTCACGGGATTACTTCTAGTTCTGAATCTGTAATTGCTGTGTTTGGAGAAAAAAGAGTTAAACTGTTTAGTTTTTCGTTTGAAAATGATGATTCTGGGAGTGGGAGGCCAGTGTTAAAATTGATTCATTTGTTGCCGAAATTTGGTCATTGGGTTTTGGATGTTTGCTTCATCAAGGGTTGTTTACCTTGTTTGGATGTGGAGAGTGATTTTCTGGCTATAGGATGTAGTGACAATTCAGTTCACATATGGGACATTTCCAGTTCTAAAATTGTTCTCAAGGTTCAATCACCAGTACAATGCCTTCTGTACACAATGAGATTATGGGGTCACAATCTTGACGTTCTCCGTATTGCATCCGGTACAATATTTAATGAGATTGTTGTTTGGAAAGTGGCCCCTCAACATGATAAATCTTCAAGAACTCCAGACGATCATGACCATCAGGGCTCCAGTTGCAGCTCATTAAAAGACAATCTGTATGAGGCTTTTCACATATGTAAACTTGCTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCGTCTTGTGGATCTAAACTGGTATCTGTTTCTGATGACCGTAGTGCACGTGTCTGGGATGTTCCTATTGAAAGGGAAGATTCATTGCACCATGATCCCATTGCCATTGTCTTATTTGGACATAATGCTCGAGTTTGGGACTGCTGTATTTCTGATAATTTTATTGTCACTGTCAGCGAGGATTGTACATGTCGTATATGGGGAATTGGTGGTGAACAGCTGCAAGTCATTAAGGAGCACATAGGAAGGGGTATATGGAGATGTTTGTATGATCCAAATTTGTCAATTGTTATAACTGCTGGATTTGACTCTGCTATCAAGGTGCATAGGCCTCATGCTTGTCTGTCCAGGGGTTTGGCAGCAGCACAATTGTCCCCTGAAAGAACAGAGATATTTTCCATTAGCATCCCTGATGTGTTGGAGCATACTGGACTGATGGACAGCAAGAGTGAATACGTTCGTTGTTTGCGTTTTTCTTCTCAGGATTCTCTTTATGTCGCTACCAATCATGGTTATCTCTACCATGCTAAATTATGTGAGGCCGGAGGCGCTCATTGGAGTCAGCTTGTTCAGGTCAGCAACGGGGCTCCAATTATCTGTATGGATTTATTGTCCAAGGACTCATTTGAACTTGGATGTGGTGAGGAGGATTGGATCGCTATTGGAGATGGTAAAGGAAATATGACAGTTATtggagttacaaagaatgattGTACTCCTGCAGTTAGATTGAGCTTTACATGGCAAGCTGAAGTGGAGAGACAACTCTTGGGTACTTTTTGGTGCAAATCTTTGGGATGTAGGTATGTCTTTACGGCTAACCCTAGAGGAGGATTGAAACTCTGGAGGTTGCCCGACCCTTCACAATCTGATAGTCAGATCTCCGTGAGGAATAACATTGTGTCACATGCAGCCGAGTTCATATCAAGTTATGGAATGCGGATAATGTGTTTGGATGCATGCTTGGAGGAAGAGGTCCTAGCATGTGGAGATGTACGTGGTAATATGGTTTTATTTCCTTTGCTAAAAAATCTGGTGTTGGGCACATCTGTTGCACAAGAGATGAAAATATCCCCAGTAAATCATTTTAAAGGAGTTCACGGGATTTCAAGTGTCTCCAGTGTTGTTGTGACTAAGCTTGTTTACAATCAAATCGAGATACACTCAACTGGAGCAGATGGTTGTATATGCTATCTGGAATATGATAGAGAAATGCAGAATTTTCAATTTACGGGAATGAAACAAGTGAAAGAATTGACATTGATTGAGCATGTTTCTGTTGATAACAACTCCGAAGATGCATCATCAAGAAGCTATGCAGCAGGTTTTGCATCTGTAGATTTCATAGTATGGAACTTATCCAATGAGAATAAGGTGATGAAAATTCCATGTGGTGGCTGGCGGCGTCCTCATTCCTATTTTCTTGGTGACGTACCAGAGATGAAGAACTGTTTTGCCTTTGTTaaggatgaaattatatatatacatagacACTGGGTTAATGATAACGGTGGGAAGATATACCCTATGAGTTTGCATATGCAATTCCATGGGAGAGAGATACATTCCTTGTGCTTTATATATGAAGATATGCTTCTCGGAGATAATTATAAGCATGCATTATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAAGATGGGACTGTGAGATTGACTTGGTACTCTCCAGGTATTAAGAATTGGTCCATGTCAAACTTGCTTGGTGAGCATGTCGGAGGATCAGCTGTACGATCAATTTGTTGTGTCTCAAAACTACACACCATTCCTTCAGTTACAGGCAATGTACATGATGAGGGGAGCGAACTAATTGCTGCAAATGAGGACAAAGATAATCCAACTTTACTAATATCTGTGGGTGCAAAGCGTGTCTTAACTTCTTGGTTACTTAAAAGTAAGAGGGACAACAAAACTGATTTACTAACTGATAATCAGCATAATTCAAAAGAAGTTGATgatcaaattttgtcaaatttatcCTCTTCAATGACGTTCCAGTGGCTTTCCACTGACATGCGAACCAAATATTCAACTACGCACAGATATGCAGAAAATAAAGTAGTTGGTGTTGCTGAAAATGGTTCTAATATAAAATTTGGTGGTGAACCTGGATCACTGGTTTCTGAAGGCGGAATGATGAACTTGGTCAGAGATCAACATGAGGATGACTGGAGATATCTTGCAGTCACTGCTTTTCTTGTTAAATGTGCTGGCTCCAGGATATCTGtctgttttgttgttgttgcttgtTCAGATGCTACAGTTATGTTACGGGCTTTAGTTTTGCCCTTTCGCTTATGGTTTGACATCGCATTACTTGTTCCTTTATTGGCACCTGTTTTGTCACTGCAACACATCGTCTTTCCCATTCGTAGGCCTTATAAAGATAACATACAAGTTGGAAATGGTTACATTGTGATTAGTGGATCTACTGACGGGAGTGTTACATTTTGGGACCTGACTGACAGTGTGGAAGCTTTTATGCAGAGAGTTTCAGTTTGTGATGTAGAGAAGCTTTTTGACTGTCAAAAACGACCACGCACGGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGATCTTTAAGAAGTGGGTTATCAAAGAAAAGACAAGATAACAATTTGGTGACTTCAAAAGCAAAAAACAATGCTGAAAGCATCGATTCTACTACACATGGGACCTCTTCATTGCCAAATAAATCTGAAGACAGCAATATGGTTTGTTCTCAAGCCATGCATACAGCTTCCCCTGAGTTAGAAACTAAGACTGATGATTCATCAGTGGAAATATGTGAAATACAGTCTCTACGCCTTTTAAAAAATGTTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAAGGTGGGCAAAATAATGATACTTGTGTGTACAGCATAGTTAGTGGGGGTGATGATCAATCAATTCATCATCTCGTGGTTGAGTTATCACCTAAAACAATAACCCCAGATGTAACACATTTGGTCACTGAACCTGAATGTATAAAGGACTCCAGTTTTCTAAATCCGAGTAAAAGCTACAATATCATATTCTTAAATTCTGAAAAGTTTCCTTCAGCCCACAGCTCTTCTGTGAAAGGTGTCTGGACGGATGGATCTTGGGTGTTTTCGACTGGACTTGATCAGCGGGTCAGATGCTGGCATATTCACCAGAGTAAACTAATAGAACGTGCACACCTAATAGTTAGTGTGCCGGAGCCAGAAGCATTATCTGCTAGGGCTTATAGCAGGAACCATTATCAAATTGCTGTTGCCGGAAGAGGGATGCAAATAGTGGACTTCTCAGGATGCTAA 4116 0.3975 MQIDSAKEATMVTEEENQRLTEWRLHRGPYLGDISALCFLHRPNHSLPLLLAGLGSEILLYDLELGKIMRSFSVFDGVRVHGITSSSESVIAVFGEKRVKLFSFSFENDDSGSGRPVLKLIHLLPKFGHWVLDVCFIKGCLPCLDVESDFLAIGCSDNSVHIWDISSSKIVLKVQSPVQCLLYTMRLWGHNLDVLRIASGTIFNEIVVWKVAPQHDKSSRTPDDHDHQGSSCSSLKDNLYEAFHICKLAGHEGSIFRIAWSSCGSKLVSVSDDRSARVWDVPIEREDSLHHDPIAIVLFGHNARVWDCCISDNFIVTVSEDCTCRIWGIGGEQLQVIKEHIGRGIWRCLYDPNLSIVITAGFDSAIKVHRPHACLSRGLAAAQLSPERTEIFSISIPDVLEHTGLMDSKSEYVRCLRFSSQDSLYVATNHGYLYHAKLCEAGGAHWSQLVQVSNGAPIICMDLLSKDSFELGCGEEDWIAIGDGKGNMTVIGVTKNDCTPAVRLSFTWQAEVERQLLGTFWCKSLGCRYVFTANPRGGLKLWRLPDPSQSDSQISVRNNIVSHAAEFISSYGMRIMCLDACLEEEVLACGDVRGNMVLFPLLKNLVLGTSVAQEMKISPVNHFKGVHGISSVSSVVVTKLVYNQIEIHSTGADGCICYLEYDREMQNFQFTGMKQVKELTLIEHVSVDNNSEDASSRSYAAGFASVDFIVWNLSNENKVMKIPCGGWRRPHSYFLGDVPEMKNCFAFVKDEIIYIHRHWVNDNGGKIYPMSLHMQFHGREIHSLCFIYEDMLLGDNYKHALFSKSSWIATGCEDGTVRLTWYSPGIKNWSMSNLLGEHVGGSAVRSICCVSKLHTIPSVTGNVHDEGSELIAANEDKDNPTLLISVGAKRVLTSWLLKSKRDNKTDLLTDNQHNSKEVDDQILSNLSSSMTFQWLSTDMRTKYSTTHRYAENKVVGVAENGSNIKFGGEPGSLVSEGGMMNLVRDQHEDDWRYLAVTAFLVKCAGSRISVCFVVVACSDATVMLRALVLPFRLWFDIALLVPLLAPVLSLQHIVFPIRRPYKDNIQVGNGYIVISGSTDGSVTFWDLTDSVEAFMQRVSVCDVEKLFDCQKRPRTGRGSQGGRQWRSLRSGLSKKRQDNNLVTSKAKNNAESIDSTTHGTSSLPNKSEDSNMVCSQAMHTASPELETKTDDSSVEICEIQSLRLLKNVHQSGVNCLHVSEIKGGQNNDTCVYSIVSGGDDQSIHHLVVELSPKTITPDVTHLVTEPECIKDSSFLNPSKSYNIIFLNSEKFPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHIHQSKLIERAHLIVSVPEPEALSARAYSRNHYQIAVAGRGMQIVDFSGC 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04324 1371 SUPERFAMILY WD40 repeat-like 18 232 IPR036322 GO:0005515
Tsu07g04324 1371 Gene3D - 294 506 IPR015943 GO:0005515
Tsu07g04324 1371 MobiDBLite consensus disorder prediction 1112 1171 - -
Tsu07g04324 1371 Pfam WD domain, G-beta repeat 299 327 IPR001680 GO:0005515
Tsu07g04324 1371 Pfam WD domain, G-beta repeat 128 164 IPR001680 GO:0005515
Tsu07g04324 1371 Pfam WD domain, G-beta repeat 247 280 IPR001680 GO:0005515
Tsu07g04324 1371 Gene3D - 603 955 IPR015943 GO:0005515
Tsu07g04324 1371 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Tsu07g04324 1371 ProSiteProfiles Trp-Asp (WD) repeats profile. 1069 1095 IPR001680 GO:0005515
Tsu07g04324 1371 SUPERFAMILY WD40 repeat-like 145 544 IPR036322 GO:0005515
Tsu07g04324 1371 SUPERFAMILY WD40 repeat-like 1069 1333 IPR036322 GO:0005515
Tsu07g04324 1371 SUPERFAMILY WD40 repeat-like 527 852 IPR036322 GO:0005515
Tsu07g04324 1371 Gene3D - 242 293 IPR015943 GO:0005515
Tsu07g04324 1371 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 173 IPR001680 GO:0005515
Tsu07g04324 1371 Gene3D - 1064 1369 IPR015943 GO:0005515
Tsu07g04324 1371 Gene3D - 5 241 IPR015943 GO:0005515
Tsu07g04324 1371 MobiDBLite consensus disorder prediction 1134 1171 - -
Tsu07g04324 1371 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 281 IPR001680 GO:0005515
Tsu07g04324 1371 PANTHER WD REPEAT PROTEIN 27 1370 - -
Tsu07g04324 1371 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 281 - -
Tsu07g04324 1371 SMART WD40_4 117 164 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 241 280 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 1285 1322 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 1047 1086 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 330 370 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 769 821 IPR001680 GO:0005515
Tsu07g04324 1371 SMART WD40_4 291 328 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04324 K24737 - gmx:100780968 2088.54