Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04316 ATGTCGAAACTAAGGTTGGAGGGTAAGGTTGCTATTGTGACAGGGGCGGCAAGCGGAATAGGAGCCGAGGCAGCCAAGACATTCGTTGAAAATGGAGCATTTGTAGTTATAGCAGATGTCAATGACGAATTGGGTCACCAAGTTGCGACTTCAATTGGCTTAGACAAAGTGAGCTACCACCATTGTGATGTGAGAGATGAGAAACAAGTTGAGGAAACGGTAGCTTTCGCATTGGAGAAATATGGCACCCTTGACATCATGTTCAGCAATGCTGGAATCGAGGGTCCTATGTCTAGCATACTAGAATTTAATCTAAGTGAATTTGACAACACCATGGCCGTGAATGTTCGTGGATCAGTTGCAACTATCAAACATGCTGCACGCGTCATGGTGGAAAGAAAAATACGCGGATCCATCATTTGCACGGCTAGTGTGGCTGGCTCCATTGCTGGAAGTGGTGGTCATGATTATGTCACATCCAAACATGGTCTTATAGGGCTCGTTCGCTCAACGTGCGGTGAGCTTGGAGCTTATGGAATAAGAGTCAATTCTATCTCACCTTATGCTGTTGCAACACCTCTTCCATGTCGAGCATTGAACATGGAGGTGAGTGAAGTTGAAGCTATGGGGAATGATTCTGCAAATTTGAAAGGAATTACATTGAAGACTACTCATATTGCAGAAGCTGCTTTGTTTCTTGCATCAGATGAATCCGCTTATATTAGTGGACACGACTTGGTGGTCGACGGAGGTTTCTCCGTCATTAATAGTTGTGCTCCTAGTATTACAAAATAA 795 0.4428 MSKLRLEGKVAIVTGAASGIGAEAAKTFVENGAFVVIADVNDELGHQVATSIGLDKVSYHHCDVRDEKQVEETVAFALEKYGTLDIMFSNAGIEGPMSSILEFNLSEFDNTMAVNVRGSVATIKHAARVMVERKIRGSIICTASVAGSIAGSGGHDYVTSKHGLIGLVRSTCGELGAYGIRVNSISPYAVATPLPCRALNMEVSEVEAMGNDSANLKGITLKTTHIAEAALFLASDESAYISGHDLVVDGGFSVINSCAPSITK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04316 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Tsu07g04316 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Tsu07g04316 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 263 - -
Tsu07g04316 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Tsu07g04316 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Tsu07g04316 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Tsu07g04316 264 PANTHER OXIDOREDUCTASE-RELATED 1 263 - -
Tsu07g04316 264 Gene3D - 1 262 - -
Tsu07g04316 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Tsu07g04316 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04316 Tsu-Chr7 48535751 48537409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04316 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 30.888 3.89e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04316 - - gmx:100798299 395.586