Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04281 ATGTCTCGTCGCAATAGCAATGGTCGATCACCACTCGTCAATCCACAGCGTCAAATCACTTCCTTCTTCACCAAAACTCCTTCCCCTTCACCCTCTCCCTCTCTCACCAAAACCATTCCTAAATCAAACAACCCTAATCCCATTCCTAACCCTAAAACTAACCCTAACCCTAGTCCTACCCTTACTACACCTTCACCTCTCAATCCCCAAAAACCACACAAGCCTGGTCTCGTCATCGACGCTTCTCCTACACCAACAACAACTCCACCATCCTCTTCGCATTCTGATTTCATCGGTAAAAGGATCAAGGTTTATTGGCCTTTAGACGATGCTTGGTACGAAGGTGTTGTCAAATCATTTGATACTGTTACTTCCAAGCATCGGATTCGTTACGATGATGACGAAGAGGAATCAATTGATATTTCTAAGGAGAAGATTGAGAGGCTTCAGGATAATAATTCTTCTAAGAAGCTTAAACGGTTGCGGCGTGGTTCTTCGCCTATTAGGAAGATGGTGATTGAGGATAATGAGGTAGAAGAAAGTCCCaaagaggaaaaagaagaacttaataatgatgatggtgatggtaatgatgatgatgattccgCCGATGAAGATTGGGGGAAGAATGCTGTATTGGAGGATGCtgcagatgatgaagaagaagatatgGAGCTGGAGGAAGAAAATGAGGTTGTGAAGAACTCTAATGGAAAGAGTAGCGGCAAGGTTGAACCCAAAAAGCGGAAGCTTGTGGGAGCCGGGAAACCGGAGCCTGCGAAAAAGAGCAAGAGTGGAAAGGAAGTTAATGGGGTAGCTGTTAAGCTCTCACCATTGGAGGTTAAGATTTTAAATCATCTCTTGTGTTTTGCAGTTAAAAAGATATCTGATGATGTAGACAATGTTGCAACTGGTGATGCTTCTGAAAGATTTGTGCTCcgtgaagctcaaaagtttcgCTTTCTGGGAAAAGATCGCAGGGACGCCAAGCGAAGGCGTCCAGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCAGATTTTGTGAGGGGTTTGTCAGATGGCCAGAGACAATGGTGGGACTTCAAGTCAAAACATATGGAcaaagttttgtttttcaagATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACATATAGGAGCAAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAAAATTTCTCAATGAATGTAGAGAAACTGGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAACAGACAGAAACACCTGATCAGCTGGAGCTTCGTCGCAAGGAGAGCGGATCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACAATAACGGATGGGGAGTTTATGTCAACAAATCCCGAAGCTGCATATTTGATGGCACTGACTGAGCACCATGAGAACCATCCAAATGAAATGTCAGAGCGCATCTACGGTGTTTGTGTAGTTGATGTTTCCACAAGCAGAGTCATACTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCATTGTGCTCTATCTTGTCTGAGATCAGGCCAGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACAGAAAGGGTACTGCTGAAACACACCAGAAACCCTCTAGTGAGTGAATTAATTCCAATTGTAGAGTTCTGGGATGCTGATAAAACTTTGGATCAATTGAAGAGAATTTATGGGCACAATAATGATGTTAGTGTTCAAGATGGTGTGTTAGATTGTCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGGTCATGACAGCAGAAGTGCACTCTCGGCACTTGGTGGTGCTCTCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGCTGCTTAGATTTGCGCAGTTTGAGTTGCTTCCATGTTCTGTGTTCAGTGGTCTTGCTTCAAAACCATACATGGTTCTTGATGCAGTAGCCCTAGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGAGTCTTCTGGCACACTCTATGCTCAATTAAACCAATGTGTTACGGCGTTTGGGAAGAGATTGCTAAAGTCATGGCTTGCAAGACCGTTATGTCGTGTGGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCATGTTTGAAGGGAGAAAATCTACCTCACGCCCTAGAATTTCGAAAAGCATTATCGAAGTTACCTGACATGGAGCGGTTGCTTGCTCGGGTGCTCTCTTCTagGGATGCTAGTGGAAGGAATGCTAATAAAGTTGTTCTGTATGAGGATTCATCAAAGAAACAACTGCAAGAGTTTATTTCAGCCCTGCGCGGTCTTGAACTAATGGCACAAGCTTGCTTGTCACTCGGTGTCATTTTGAATGATGTCAAATCTAGACAACTTAGTCAACTTTTAACACCTGGTAAAGGTCTTCCTGATGTAAGCGCGGATCTGAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGCCGTATAGTACCTCATGAAGGAGTTGACATAGAATATGATTCAGCTTGTAAGGCAGTTAAAGAGATTGAGTCCGGTTTATTAAAGCATCTCAAGGAACAAAGGAAATTACTTGGATGCACATCAATCTCTTATGTTCATATCGGAAAGGACACGTACCTATTGGAAGTGCCTGAAAATTTGTCTGAGAATATTCCTCGGGATTATGAGAGGCGTTCATCCAAGAAAGGCTTCTGTAGGTATTGGACTCCAgagattaaaatatttttgaaagagctCTCCCATGCTGAATCTGAAAAGGAGACCTTATTGAAAAGTACATTGCAGAGAATGATTGGGCGTTTTTGTGAGCATCACACTCAGTGGAAGCAGTTGGTATCTGCAACTGCTGAGTTGGATgttttgatcaatttagctaTTGTCAGTGATTACTATGAAGGACCAACATGCAGACCAAGTTTTGCTGGGACATTATGTACAAATGAAGCTCCATACATCTATGCTAAAAGTCTGGGGCACCCAGTTCTTAGGAGTGATTCCTTGGGAAAGGCCTCCTTTGTACCTAATGACATAACCATAGGTGGTCCAGGTCCAGATCAGGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCTCAGGTAGTAGGGGCTGATGTTCCTGCAGAAAGTTTTGAATTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCGGCAACTTGCAATTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACCTCAACGTCTGACGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTACGTAAGGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGATTAGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCTCTCACATGGCATGCCAAGTTGGTAGTGGAAGTGAAGGTTTGGACGAAGTAACCTTTCTTTACAGGCTGACTGCTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTACCAACTTCTGTGCTCCAGAAGGCTGCTGCTAAGTCCAGTGAATTTGAGGCCACTTATGGTAAATACAGAAAGGCGTTATCTGAAACAAACTCTCTGAATCAAAGTTGGGTCGATGAGATAACAGCTATTGTACAAAAATTGAACAATGCTGCTACAAATTTGAGTTTGGAGGATACTGTTTCTGATGGTTCCCTGATGGGGCTTCAATGTAAAGCAAGAAAACTTCTACAACAATGTTAA 3915 0.4156 MSRRNSNGRSPLVNPQRQITSFFTKTPSPSPSPSLTKTIPKSNNPNPIPNPKTNPNPSPTLTTPSPLNPQKPHKPGLVIDASPTPTTTPPSSSHSDFIGKRIKVYWPLDDAWYEGVVKSFDTVTSKHRIRYDDDEEESIDISKEKIERLQDNNSSKKLKRLRRGSSPIRKMVIEDNEVEESPKEEKEELNNDDGDGNDDDDSADEDWGKNAVLEDAADDEEEDMELEEENEVVKNSNGKSSGKVEPKKRKLVGAGKPEPAKKSKSGKEVNGVAVKLSPLEVKILNHLLCFAVKKISDDVDNVATGDASERFVLREAQKFRFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRGLSDGQRQWWDFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPDQLELRRKESGSKDKVVRREICAVVSKGTITDGEFMSTNPEAAYLMALTEHHENHPNEMSERIYGVCVVDVSTSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLVSELIPIVEFWDADKTLDQLKRIYGHNNDVSVQDGVLDCLPDVLLELVKTGHDSRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGESSGTLYAQLNQCVTAFGKRLLKSWLARPLCRVESIKERQEAVACLKGENLPHALEFRKALSKLPDMERLLARVLSSRDASGRNANKVVLYEDSSKKQLQEFISALRGLELMAQACLSLGVILNDVKSRQLSQLLTPGKGLPDVSADLNHFKDAFDWVEANNSGRIVPHEGVDIEYDSACKAVKEIESGLLKHLKEQRKLLGCTSISYVHIGKDTYLLEVPENLSENIPRDYERRSSKKGFCRYWTPEIKIFLKELSHAESEKETLLKSTLQRMIGRFCEHHTQWKQLVSATAELDVLINLAIVSDYYEGPTCRPSFAGTLCTNEAPYIYAKSLGHPVLRSDSLGKASFVPNDITIGGPGPDQASFILLTGPNMGGKSTLLRQVCLAVILAQVVGADVPAESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATCNSLVALDELGRGTSTSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAIDYLKDPKVCLSHMACQVGSGSEGLDEVTFLYRLTAGACPKSYGVNVARLAGLPTSVLQKAAAKSSEFEATYGKYRKALSETNSLNQSWVDEITAIVQKLNNAATNLSLEDTVSDGSLMGLQCKARKLLQQC 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04281 1304 Coils Coil 210 230 - -
Tsu07g04281 1304 Gene3D - 91 148 - -
Tsu07g04281 1304 Gene3D - 662 983 - -
Tsu07g04281 1304 SUPERFAMILY DNA repair protein MutS, domain I 343 466 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 322 1275 - -
Tsu07g04281 1304 Gene3D - 994 1277 IPR027417 -
Tsu07g04281 1304 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 322 1275 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tsu07g04281 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1241 IPR027417 -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 1 43 - -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 215 229 - -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 191 205 - -
Tsu07g04281 1304 SMART DNAend 682 1023 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 Gene3D DNA repair protein MutS, domain I 313 474 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 SUPERFAMILY DNA repair protein MutS, domain III 665 989 IPR036187 -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 151 267 - -
Tsu07g04281 1304 Pfam MutS domain V 1049 1240 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 Pfam MutS domain III 668 983 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 Pfam MutS domain I 358 470 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 SMART mutATP5 1045 1238 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 81 95 - -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 167 190 - -
Tsu07g04281 1304 Pfam MutS domain II 481 633 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 SUPERFAMILY Tudor/PWWP/MBT 96 139 - -
Tsu07g04281 1304 Gene3D MutS, connector domain 479 659 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 44 71 - -
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 241 265 - -
Tsu07g04281 1304 Gene3D - 828 959 - -
Tsu07g04281 1304 Coils Coil 132 159 - -
Tsu07g04281 1304 SUPERFAMILY DNA repair protein MutS, domain II 475 677 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu07g04281 1304 MobiDBLite consensus disorder prediction 1 98 - -
Tsu07g04281 1304 PIRSF Msh6 1 1287 IPR017261 GO:0006298|GO:0030983
Tsu07g04281 1304 Pfam MutS family domain IV 852 943 IPR007861 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04281 Tsu-Chr7 48267472 48275990 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04281 K08737 - gmx:100811104 1883.61