Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04276 ATGTCTTCCAAATTCTCACTCTCACATCTCATTACTCTCTTCTTCATCCTCCTCCTCCATTTCACTTGCGACGCACGTGATACATTCGCGTGTGACGCAAAAGATATAACAACAAAGAACTTACCATTTTGTAATGTGAAACTGTCTATTCAAGAGAGAGTGAAAGATCTTATTGGAAGATTAACTTTGCAAGAGAAAGTTAATTTACTAGTGAATAATGCTGCGGCGGTTCCGAGAGTCGGAATAAAGGGTTATGAGTGGTGGTCGGAGGCACTTCATGGTGTTTCAAATGTGGGCCCTGGAACTAGATTTGGTGGTGTGTTTCCTGGTGCTACAAGTTTTCCTCAAGTTATCACCACCGCTGCTTCTTTTAATGCTTCTTTGTGGGAAGCTATTGGACGGGTTGTCTCGGATGAAGCAAGGGCAATGTACAATGGAGGAGCAGCTGGATTAACTTATTGGAGTccaaatgtaaatatttttagagACCCTAGGTGGGGTCGTGGACAGGAAACTCCCGGTGAAGATCCTGTGTTAGCCGGTAGTTATGCCGCAAGTTATGTTAAAGGGTTACAGGGAACAGACGGTAACAAGTTGAAAGTGGCTGCTTGTTGTAAACATTTCACAGCTTATGATATTGATAATTGGAATGGTGTGGATCGCTTTCACTTCAATGCACAGGTGAGTAAGCAAGACATAGAGGACACATTCGATGTGCCATTTAGAATGTGTGTGAAGGAAGGAAAAGTAGCTAGTGTCATGTGTTCTTACAATCAAGTTAATGGTGTCCCTACTTGTGCTGACCCAAACCTCCTAAAGAAAACAGTTCGTGGACAATGGGGTCTTGATGGGTACATTGTATCTGACTGTGACTCTGTTGGAGTGTTTTATAATAGCCAACATTATACATCAACGCCAGAAGAAGCTGCTGCTGATGCCATCAAAGCAGGTTTGGATTTAGATTGTGGACCATTCCTAGGGTTGCACACACAAGATGCTGTGAAAAAAGGTTTATTAAAAGAAACAGATGTGAATGGTGCTTTGGTGAATACACTTACTGTGCAAATGAGATTAGGGATGTTTGATGGAGAGCCATCAGCTCAAGCTTATGGAAGATTGGGCCCAAAAGATGTATGTAAACCAGCTCACCAAGAGCTTGCACTTGATGCTGCTAGACAAGGAATAGTGCTCCTCAAAAACACTGGTCCTACTTTGCCTCTCTCCCCACAACGACACCGAACCGTGGCTGTCATTGGGCCCAATTCTAATGTCACGGTTACCATGATCGGAAACTATGCCGGTATTGCATGTGGATATACTAGCCCCTTACAAGGAATAGGAAGATATGCTAGGACAATTCATCAATTGGGTTGTGCAAATGTAGCTTGTGGAGATGATAAACAATTCGGGCCTGCCTTAGATGCAGCTCGTCATGCCGATGCAACTGTGCTAGTGATAGGCTTAGATCAGTCTATTGAAGCCGAAACCGTTGATAGGACTGGCTTGCTTTTGCCTGGACATCAACAAGATCTTGTTTCAAAGGTGGCAGCTGCATCAAAAGGACCAACTATTTTGGTCTTGATGTCTGGTGGGCCTGTCGACATTACTTTCGCAAAGAATGATCCCCGAATCGCTGGCATCTTGTGGGCCGGTTATCCAGGCCAAGCTGGTGGGGCCGCCATTGCTGATATTCTATTTGGAACCGCTAATCCAGGAGGCAAGCTACCTGTGACATGGTACCCACAAGAGTACCTAAAAAATTTGGCCATGACAAATATGGCAATGAGACCAAGCAATGTAGGGTACCCAGGAAGAACATATAGATTCTACAAGGGACCAGTTGTATATCCATTTGGACATGGACTAACATACACACATTTTGTACACACATTAGCTAGTGCACCTACATTAGTCTCAGTTCCGGTACACGGTCACCGACACGGCAATAACACAAACATTTCAAACAAAGCAATTAGAGTGACACATGCAAGATGTGGCAAACTTTCTATAACCCTTCATGTTGATGTTAAAAATGTTGGATCTAGAGATGGTACTCACACATTGTTAGTGTTCTCTGCACCACCTAATGGTGGTGCCAATTGGGTACCACAAAAACAGCTTGTGACTTTTGAAAAAGTTCATGTTCCTGCCAATACTAAGCAAAGGGTGAAAGTTAATATTCATGTTTGCAAATTGCTTAGTGTTGTTGATAGGTCTGGGATTAGGAGAATTCCAATGGGAGTACATAGTCTTCATATTGGTGATGTTAAACATTCTGTTTCACTTCAAGCAGAAGCACTTGGGATTATCAAGTCTTGA 2319 0.4286 MSSKFSLSHLITLFFILLLHFTCDARDTFACDAKDITTKNLPFCNVKLSIQERVKDLIGRLTLQEKVNLLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTRFGGVFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGSYAASYVKGLQGTDGNKLKVAACCKHFTAYDIDNWNGVDRFHFNAQVSKQDIEDTFDVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGQWGLDGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGLDLDCGPFLGLHTQDAVKKGLLKETDVNGALVNTLTVQMRLGMFDGEPSAQAYGRLGPKDVCKPAHQELALDAARQGIVLLKNTGPTLPLSPQRHRTVAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGRYARTIHQLGCANVACGDDKQFGPALDAARHADATVLVIGLDQSIEAETVDRTGLLLPGHQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPRIAGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLKNLAMTNMAMRPSNVGYPGRTYRFYKGPVVYPFGHGLTYTHFVHTLASAPTLVSVPVHGHRHGNNTNISNKAIRVTHARCGKLSITLHVDVKNVGSRDGTHTLLVFSAPPNGGANWVPQKQLVTFEKVHVPANTKQRVKVNIHVCKLLSVVDRSGIRRIPMGVHSLHIGDVKHSVSLQAEALGIIKS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04276 772 Gene3D - 381 625 IPR036881 GO:0004553|GO:0005975
Tsu07g04276 772 Gene3D - 53 370 IPR036962 GO:0004553|GO:0005975
Tsu07g04276 772 Gene3D Immunoglobulins 648 768 IPR013783 -
Tsu07g04276 772 SUPERFAMILY (Trans)glycosidases 41 394 IPR017853 -
Tsu07g04276 772 Pfam Fibronectin type III-like domain 687 755 IPR026891 -
Tsu07g04276 772 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 627 IPR036881 GO:0004553|GO:0005975
Tsu07g04276 772 SMART Fn3_like_2 686 757 IPR026891 -
Tsu07g04276 772 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 6 768 - -
Tsu07g04276 772 PANTHER SUGAR HYDROLASE-RELATED 6 768 IPR044993 GO:0009044|GO:0045493
Tsu07g04276 772 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 624 IPR002772 GO:0004553|GO:0005975
Tsu07g04276 772 Pfam Glycosyl hydrolase family 3 N terminal domain 107 347 IPR001764 GO:0004553|GO:0005975
Tsu07g04276 772 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Tsu07g04276 772 PRINTS Glycosyl hydrolase family 3 signature 201 217 IPR001764 GO:0004553|GO:0005975
Tsu07g04276 772 PRINTS Glycosyl hydrolase family 3 signature 275 293 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04276 Tsu-Chr7 48223113 48229106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04276 11 772 Glycoside Hydrolase AT1G02640 74.215 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04276 - - gmx:100789316 1340.87