Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04253 ATGGCATCTGCACCTTCCATGTCAGTTTCTTTGGAGTGTGTGAACGTATGCAATTTGTGGAGAGGGGATGGAAATGGAAGATATGATTGTAATTTTCTATCGTGTGCGTCTAAAACTCCTAGGGTTCTTACTGGTTTTCTTGCCACCACTGCTCATCCTCATTACTTGCTCAATGCTCCAAATGGAAGAAGGAACCGGTATAATTTTGCGTGTGAAGCTTTTAGTATAGTAGGTTCATATTCCGATGATGAAGCACTTGGCATCACGCTTCACGATGGATTCTCTAGATCTATCTTTTCTAGATTTGCTCCTAGACGTTGGCAATTGTCTTGTTCTTCGGCTTTTTCCGATATTGCCAGCGAGTTTTCTCCTGGAAGTTTGTGGGAGGATCTTAAGCCCGTGATCTCGTATCTTCCTCCGAAAGAACTGGAGTTAGTCCATAATGCTTTTATGTTGGCATTTAAAGCTCATGATGGTCAGAAAAGACGCAGCGGTGAACCCTTTATCATTCATCCGGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTGCTCCATGACACAGTTGAAGATACAGATGCTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTGCTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTGGGAAAGTTGAAGTACAAGAATCAAAATGATTCTGTTCAAGATGTGAAAGCAGAGGACCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATTATCGTCAAATTAGCAGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCGGTGGAGACATTACAGGTATTTGCTCCTTTGGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCGTTTATGTACACAAATCCTGAAGATTATGCGAAGGTGAAGAGAAGAGTTGCCGACCTGTTCAAAGAACACGAGAAAGATCTTTTAGAGGCaaacaaaatattgttaaaGAAAATCCAAGATGATCAATTCTTAGACCTTTTGGCAGTTAAAACGGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAGTCTAAAAGTTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTGTCATTATTAAACCAAAGCCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTATCATGTTCTGGGGTTGATCCATGGAGTCTGGACCCCTATTCCTAGATCTGTGAAGGATTACATTGCAACCCCTAAACCTAATGGGTACAAGAGTCTTCATAGCACTGTGATTCCGTTTTTGTATGAGAGTATGTTCAGGCTTGAAATCCAGatTAGAACAGAAGAAATGGATTTGATAGCGGAGAGGGGCATTGCAGCTCATTATAGTGGGAAAGAATTTGTTACTGACTTGGTTGGAAGTGCAGTGCCCAGTGGTAAAAGCTCAAGGGGGAAGACGGTGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCTATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAAGGTGCTACAGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGCAATCTTGTTTCTCCTGCACGCGTGCTTGCAAATGCAGAAGTTGTGGAGATAATAACATATAATGCACTTTCCAGCAAATCGGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTGAAGGAGCAAGCTGCACTTTCCGCTGCTGATATCACTACAGAAGCAGTTAATGACTTTATCAGTGATTCTGACGGGGATAGTGACTCTGATAAGCTGTCAAATGGTTCCAAACATAAGATGGGGAGAATATTATTGAATGGTGTGGAAATATCAACTTCAGAAAGAAGTGAGACTGTCCTCCAGAGTAAGAATGGAAGTGCTTGGACTCCCAAGGTCAATGGAAAACACAATAAACATGTGCATCATGTAAATTTAAAGGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTTGCCAATATGATTCAAGTTAACAATCCAAAATATAAAGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCTCATAAAATTGCCTCGTGGCACAATATAGAAGGGCATTCTATCCAATGGTTATCTGTAGTATGCATAGACCGAAGAGGCATGATGGGTGAGGTCACTACAGCATTGGCCACTGCAGACATAACCATATGTTCTTGTGCGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTtatgttatttcaaatagatggaaatttagaaaatttgGTGAATGCTTGCTCTAGAGTAGATCAAATACTGGGTGTTTTGGGATGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGAAAACCACGGCATTCTTGAATGTTAG 2637 0.4175 MASAPSMSVSLECVNVCNLWRGDGNGRYDCNFLSCASKTPRVLTGFLATTAHPHYLLNAPNGRRNRYNFACEAFSIVGSYSDDEALGITLHDGFSRSIFSRFAPRRWQLSCSSAFSDIASEFSPGSLWEDLKPVISYLPPKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDAVTFERIEEEFGAAVRHIVEGETKVSKLGKLKYKNQNDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAVETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDYAKVKRRVADLFKEHEKDLLEANKILLKKIQDDQFLDLLAVKTEVRAVCKEPYSVYKAVLKSKSLINEINQIAQLRVIIKPKPCIGVGPLCSPQLICYHVLGLIHGVWTPIPRSVKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGKEFVTDLVGSAVPSGKSSRGKTVCLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLKEQAALSAADITTEAVNDFISDSDGDSDSDKLSNGSKHKMGRILLNGVEISTSERSETVLQSKNGSAWTPKVNGKHNKHVHHVNLKGKGDMMLQGNHVANMIQVNNPKYKEVLPGLESWQAHKIASWHNIEGHSIQWLSVVCIDRRGMMGEVTTALATADITICSCAAEIDGGRGMAVMLFQIDGNLENLVNACSRVDQILGVLGWSTGCSWPSLMENHGILEC 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04253 878 Pfam HD domain 149 306 - -
Tsu07g04253 878 CDD NT_Rel-Spo_like 365 485 IPR007685 GO:0015969
Tsu07g04253 878 Pfam TGS domain 562 621 IPR004095 -
Tsu07g04253 878 Gene3D Beta Polymerase, domain 2 323 477 IPR043519 -
Tsu07g04253 878 CDD HDc 166 297 IPR003607 -
Tsu07g04253 878 Gene3D Hypothetical protein af1432 128 321 - -
Tsu07g04253 878 Pfam Region found in RelA / SpoT proteins 375 492 IPR007685 GO:0015969
Tsu07g04253 878 SMART RelA_SpoT_2 375 497 IPR007685 GO:0015969
Tsu07g04253 878 Gene3D - 555 630 IPR012675 -
Tsu07g04253 878 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 878 - -
Tsu07g04253 878 SUPERFAMILY Nucleotidyltransferase 323 499 IPR043519 -
Tsu07g04253 878 CDD TGS_RSH 563 621 IPR033655 -
Tsu07g04253 878 ProSiteProfiles ACT domain profile. 791 866 IPR002912 -
Tsu07g04253 878 Gene3D - 791 858 - -
Tsu07g04253 878 ProSiteProfiles HD domain profile. 168 275 IPR006674 -
Tsu07g04253 878 ProSiteProfiles TGS domain profile. 558 621 IPR004095 -
Tsu07g04253 878 SUPERFAMILY ACT-like 791 857 IPR045865 -
Tsu07g04253 878 SMART hd_13 164 284 IPR003607 -
Tsu07g04253 878 SUPERFAMILY TGS-like 549 621 IPR012676 -
Tsu07g04253 878 SUPERFAMILY HD-domain/PDEase-like 132 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04253 Tsu-Chr7 48018952 48027422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04253 178 499 EF-hand Containing Proteins AT3G17470 31.212 9.94e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04253 K00951 - gmx:100786637 1466.44