Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04235 ATGGCCGAAGTTAATGCCGCTACCGAAACCCCTCAAAACGTGACTATCTACATCAACAACCTCAACGAAAAAATCAAGATTGAAGGTTCGTTATTTATCCCCCTTTTTCCTATTACATCAAATTTCAATAACTACATTTATATATACTCGTTTGATGCAGAGTTGAAGAAGTCGTTGCACGCTGTTTTCAGCCAATTCGGGAAGATACTTGAAGTGTTGGCTTTCAAGACTCTGAAACATAAGGGTCAAGCTTGGGTGATTTTTGAAGATGTTACTTCTGCTTCCAATGCTCTTAGGCAAATGCAAGGTTTCCCATTCTATGATAAGCCCATGAGAATACAGTATGCCAGGACTAAATCTGATATCATAGCAAAAGCAGACGGTACTTTTGTTCCTCGGGAAAAACGGAAGAGGCATGATGACAAAGGCAAAAAACGAAAGGACCAAACCGATGCTAATTTAGCTGGAATGGGAATAAATCCTGCTTATTCTGGTGCTTACGGTGCAACACCTGCTATACCTTATCCAGGCGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAACGAGACCACTCCCATGATGTTGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCTATGCAGGCACTGCAAGCCGCTGCTACTACTATTGCTCCAGTCTCCAAGTTTCCATTGTTGAGCTCTGCTACTTCTTCACCAAACATGGCAGAGAAGAAGCGTAAGGAGAGGAACAACGACACCAACCGCAACCGTAACACCGTCAAAAAGAAATCCAAGAAGGATTCAGGCCGCAAGAAAAACGGTCCTCATTTACCTTCATCATTGAAAAAAGAAATCgaacttttaaaccctaaacctATCGATGTCGATGAAATCGACAGTGATGTATACGAATACGAAGAAGAACTACCTGAAGAAGAATCAAAGAAGAATAAACGATACGATCCTGTAGCTGTCAATGATGACGTTAACCTTTCTTCTGATTTCGAGGACGAGAATGTACAATCTGACGATGAAAATGACGACGAAATCGACACTATTTTCAAAGGAATTACCGATGATAATAATAAGAAGGTGAAGGTGAATAATAATGCTGTTGTTCCAGAGCTATATCCTGAGTCTGAATATAATCCTAGTCGTGATGTTGTGGAAGGTGATGGACGTGTTAGTATTGAGGATCTTCTTAATCCTCTTAGTGAAGAACCTGAATTTGCAAAACTTCGGAAGAGAAATCAACTAATTGAGAAGCATGCTAGAACTGTTCATGCACCACTTCCGGCGGCAGATCAAGCGAAGGTAGATAGGAAGGTAGCATATGAAATAACAAAGAAACAAGTCACAAAGTGGCAACCTATTATTAAGAGAAACAGAGAGGCACCTACTTTATTCTTTGATGAAAAGACAAATCTTGGATTTTCAACTATAGGAGCAATAGCTTCTGAATTTGAACCCAGGACTGAATTTGAGAGGAAAATGGCTGCACTGGTTCATAATGACAAAGTTATTGAAGCTCATAACAAGGATGGTTCCAGGCTTCTTGAATTAAATAAGGTTTCTATCGAAGATGAGAAGGACAGGCAAAACCGGATGGCTAAAATGCGAAGCCTCCTTTTTCGGCATGAAATAAAGTCCAAGCATGTGAAAAAGATAAAGTCCAGAACATTTCATCGTTTGTTAAAGAAAGATAGATTGAAGGCAGAGTCTTCTCAATTGGAAATGGATCCTGAAGCTGCTAATGAATATGCTTTGAAACGAGAACGCCAGAGGGTGgagGAACGCATGACTCTGAAGCACAAACACAACAGTAAGTGGCTTCAACGTAACAAGCAACGTGGTTTCGATAAGCAGGATGAAGGAACTCGTGCTGCCGTGATTGAACATTTTCAAAGACATGATGAACTGACTAGAAAAATGAATACTATGgacagcagcagcagcagtgATGATAGCAgttatgaagatgatgatgatgatgatgatattaccGCTGATTCTGATCCGAATAAGGATAACAAGATTTTGCGAAAAGCAAAACAGAAGACACTAGAAGTGTTGGAGGAAGATGATGAAATTCCCAAATCAGGATTGCTATCTTTACCTTTTATGAGGCGTGGAttggagaaaagaaaagaggcAACTATTGATGAAGTCAACCAAACTCTTCATGAATTTGAAGATTCCATGAAGAAGCTGGAGGATTCTGGTGGCTCAGAAGATCCAAAAGTAGCATCTACCAGCGGCAGAAGAGTATTTGGAATGGCTAAAGCCCAGATAATTGATGCTGGTAATAAGTTGAAATTAGATAAATTTTACGATAACAGTGACAGTGAGGATGAATTGGAGGCCAGCAAAAGTGGCAACAATGAGAATGGGGGAAGTGATCTTCTGCAGAAGGATGTCATCAATGATTCAGTCTTAAATCAAGAGGTTTTAGATACTCGCAAAGAATCTGTTTTCAAGAACTttgatgaaattgtaaaaaaccCTGGGCCAAAAACTACATATGAAGTTTCCATATTTGCCTCAAATACATGGAAAAAGGCAAAACACACAAATAGTATAGACACAGACATCAAGAAGTCTCCAAAGTTTACAGGGCCTGTTAGGCATAATGTGAAGAACACTGAAAACAATCAATTGGGAGAGCATAGTGATACGGACGATGAAGGACAGATGGTGGATGGAATTCTGACTTCTGCATCTAAATCATCTTATGAACTTCCATCTCAAGAGGAGCTCATTGGACAAACTTTTGCTGGGGATGATGTAGAAGGTGATTTTGAAAAGGATAAGCAGGCGATCCTCAATGAAGAAAATCCTGAGCCAGAAAGGCCCTCACTTATTCCTGGTTGGGGACAGTGGACTAATGTACAGCATAAGATAGGTGTACCACCCCAGAGGGTCAAAGAACATGAAAATGCCCAGAGAAAAAGGGAAGACAGTCTCAATATGAGAAAGGATGCTCAGCTTAAAAATGTGATAATCTCCGAGAAACCAAGCAAGAAGGCTGAGAAACTCTATACAAAAACTGTGCCCTTTCCTTACACTTCCAAAGAGATGTTTGATCAGATTAATCGTACGCCCGTTGGACCAGATTTTAACCCGACAACTACAATTGGAGCTCTTATTCGGCCTGAAGTGGTGAAGAAACAGGGTGTTATTATAAAACCAGTAGAGTTTGAGGAAGTGAATCCTCATGGTAAACCAGTGCAAAGAAGTGTTAAGCAcaatttgaagaaaaccaaaGGCAATGATAGCCTAGCCGTAAAAAAATCGAAGTTCAAGGGAAAAAGACCAGCGGGACAGTGA 3423 0.3888 MAEVNAATETPQNVTIYINNLNEKIKIEGSLFIPLFPITSNFNNYIYIYSFDAELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQTDANLAGMGINPAYSGAYGATPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQAAATTIAPVSKFPLLSSATSSPNMAEKKRKERNNDTNRNRNTVKKKSKKDSGRKKNGPHLPSSLKKEIELLNPKPIDVDEIDSDVYEYEEELPEEESKKNKRYDPVAVNDDVNLSSDFEDENVQSDDENDDEIDTIFKGITDDNNKKVKVNNNAVVPELYPESEYNPSRDVVEGDGRVSIEDLLNPLSEEPEFAKLRKRNQLIEKHARTVHAPLPAADQAKVDRKVAYEITKKQVTKWQPIIKRNREAPTLFFDEKTNLGFSTIGAIASEFEPRTEFERKMAALVHNDKVIEAHNKDGSRLLELNKVSIEDEKDRQNRMAKMRSLLFRHEIKSKHVKKIKSRTFHRLLKKDRLKAESSQLEMDPEAANEYALKRERQRVEERMTLKHKHNSKWLQRNKQRGFDKQDEGTRAAVIEHFQRHDELTRKMNTMDSSSSSDDSSYEDDDDDDDITADSDPNKDNKILRKAKQKTLEVLEEDDEIPKSGLLSLPFMRRGLEKRKEATIDEVNQTLHEFEDSMKKLEDSGGSEDPKVASTSGRRVFGMAKAQIIDAGNKLKLDKFYDNSDSEDELEASKSGNNENGGSDLLQKDVINDSVLNQEVLDTRKESVFKNFDEIVKNPGPKTTYEVSIFASNTWKKAKHTNSIDTDIKKSPKFTGPVRHNVKNTENNQLGEHSDTDDEGQMVDGILTSASKSSYELPSQEELIGQTFAGDDVEGDFEKDKQAILNEENPEPERPSLIPGWGQWTNVQHKIGVPPQRVKEHENAQRKREDSLNMRKDAQLKNVIISEKPSKKAEKLYTKTVPFPYTSKEMFDQINRTPVGPDFNPTTTIGALIRPEVVKKQGVIIKPVEFEEVNPHGKPVQRSVKHNLKKTKGNDSLAVKKSKFKGKRPAGQ 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04235 1140 Gene3D - 9 127 IPR012677 -
Tsu07g04235 1140 Coils Coil 752 772 - -
Tsu07g04235 1140 Gene3D - 180 255 IPR012677 -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 894 929 - -
Tsu07g04235 1140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 249 IPR000504 GO:0003723
Tsu07g04235 1140 Pfam Utp14 protein 396 1098 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 633 711 - -
Tsu07g04235 1140 CDD RRM1_U1A_like 15 117 - -
Tsu07g04235 1140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 249 IPR000504 GO:0003723
Tsu07g04235 1140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 111 IPR000504 GO:0003723
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 273 290 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 645 676 - -
Tsu07g04235 1140 PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 276 1114 IPR006709 GO:0006364|GO:0032040
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 815 834 - -
Tsu07g04235 1140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 118 IPR000504 GO:0003723
Tsu07g04235 1140 SMART rrm1_1 45 114 IPR000504 GO:0003723
Tsu07g04235 1140 SMART rrm1_1 193 266 IPR000504 GO:0003723
Tsu07g04235 1140 Coils Coil 1009 1029 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 264 317 - -
Tsu07g04235 1140 SUPERFAMILY RNA-binding domain, RBD 57 249 IPR035979 GO:0003676
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 1003 1023 - -
Tsu07g04235 1140 CDD RRM2_U1A_like 190 249 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 1116 1130 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 686 702 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 1104 1140 - -
Tsu07g04235 1140 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04235 Tsu-Chr7 47884326 47897250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04235 K14567 - gmx:100784007 1055.05