Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04225 ATGGAAACAATTGCGGCCATGGATGTTGAGGAACAACCTTCCCCCACTCCCAACAACGTTAAACGCTTCGGTCTTAAAAACTCTATTCAAACTAATTTCGGCGAAGACTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTGCAATGGCAGTTTCACTTTCAACGAATTCAGTGAAATTGTATTCACCGGTGTTAGGTCAATATTATGGAGAGTGCAAGGGTCACTCTGCAACTATCAACCAGATTTTGTTTTCGGGTCATTCTAATGATCCTAATGTTCTAAGCTCATGTTCCTCAGATGGTACTATCAGAGCTTGGGACACAAGAACATTTCAGCAGGTTTCTACTATCAATGCCAGTCCTTCACAAGAAATATTCAGCTTTTCTATTGGAGGGCCTAGTGGAAATTTAATTGCTGCCGGTTGTGATTCACAGGTACTCATATGGGATCGGAGATATAACAAGCAAATTGCATGCTTGGAAGATTCTCATGTGGACGATGTTACTCAGGTTCATTTTGTCCCTGGTGAACCAGGCAAGCTCATTTCGGCTTCAGTAGATGGGTTGATCTGCATATTTGATACCACTGGAGATATCGATGATGATGATCATTTAGATTCAGTGATTAATGTGGGGACTTCAATTGCAAGGGTGggtttttttgaagaaaattatcAGAAACTTTGGTGTTTAACGCATATTGAAACTCTTGGTATATGGGACTGGAAAGATGGTAGAAATGAAGTAAACTTCTCAGATGCACGGACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTATTTTGTTGATTGTCATTACTCCAAAGAAGCCGAAAAACTATGGTTGATTGGCGGCACAAATGCGGGTACATTGGGTTACTTTCCTGTAAATTACAATGGAATGGCAACAATTGGAGCTGCAGAAGCAATTCTTGAAGGAGGTCATACAGGTATTGTTAGAAGTGTTCTACCGATGTCCAGAATTCATAGTGGATTTGGTAGTAGCAGTAGTCATAGTGATAGCTCAGGCATTTTTGGATGGACGGGTGGGGAAGATGGAAGACTATGTTGTTGGTTGTCTGATGATTCCCCTCAAAAAAATCAATCTTGGATTTCAAGTTCATTGATTATGAAACCAGAAAGAACTTGCAAGAAAAATCGTCATCATCCCTACTAA 1185 0.3966 METIAAMDVEEQPSPTPNNVKRFGLKNSIQTNFGEDYVFQIIPKDDWSAMAVSLSTNSVKLYSPVLGQYYGECKGHSATINQILFSGHSNDPNVLSSCSSDGTIRAWDTRTFQQVSTINASPSQEIFSFSIGGPSGNLIAAGCDSQVLIWDRRYNKQIACLEDSHVDDVTQVHFVPGEPGKLISASVDGLICIFDTTGDIDDDDHLDSVINVGTSIARVGFFEENYQKLWCLTHIETLGIWDWKDGRNEVNFSDARTLASESWNLDHVDYFVDCHYSKEAEKLWLIGGTNAGTLGYFPVNYNGMATIGAAEAILEGGHTGIVRSVLPMSRIHSGFGSSSSHSDSSGIFGWTGGEDGRLCCWLSDDSPQKNQSWISSSLIMKPERTCKKNRHHPY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04225 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 111 - -
Tsu07g04225 394 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Tsu07g04225 394 Gene3D - 25 300 IPR015943 GO:0005515
Tsu07g04225 394 PANTHER UNCHARACTERIZED 21 394 IPR039328 -
Tsu07g04225 394 Pfam Nucleoporin Nup120/160 55 125 - -
Tsu07g04225 394 SUPERFAMILY WD40 repeat-like 36 361 IPR036322 GO:0005515
Tsu07g04225 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 117 IPR001680 GO:0005515
Tsu07g04225 394 SMART WD40_4 66 108 IPR001680 GO:0005515
Tsu07g04225 394 SMART WD40_4 154 195 IPR001680 GO:0005515
Tsu07g04225 394 SMART WD40_4 111 151 IPR001680 GO:0005515
Tsu07g04225 394 Pfam WD domain, G-beta repeat 126 151 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04225 K24758 - gmx:100794786 650.588