Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04217 ATGGTGGCAATGGCGGTGGTTGCATCACCACAATTCCTGTGCTTCTCATCAGAATCAAATTGGAAaattacaacaacaacaaaaagaccATGTCTTCATCTTCCTCAGTTCAACTCCATTCTTCTACGCTCACCCAATAACAAGATTCATTTTCCACTCATTTCATGCTCTTCATCATCACAGACACCAGAAACTGAAACTGAAACTGCTGAATCTTGTGTCAATTTGGGTCTTCAGCTCTTTTCCAAAGGAAAGGTTAAAGATGCTTTGAATCAGTTTGAAACAGCACTTTCTTTGAATCCAAATCCTGTAGAGGCCCAAGCTGCATTCTATAACAAAGCTTGCTGTCATGCATATAGaggAGAAGGAAAGAAAGCGGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAACGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTGGGTGGGGAAGATGTTGGCTCCAGTTTCCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCACCGTTTCGTGGGGTTAGGAGATTCTTTTCCATAGCATTTACAGCAGCTGCAGGAAtatcattgttttttaatataccGAGGATATTGCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTTTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATCGTTGTTTTTGTGGCGCTATTCTTATGGGACAATAAAAAAGAGGAGGAACAGCTTGCGCAAATATCCCGAAATGAGACACTATCAAGGTTGCCTTTGCGCCTGTCAACTAATCGCATAGTTGAACTCGTGCAGCTAAGGGACATAGTTAGGCCAGTTATATTAGCTGGGAAAAAAGAAACCGTGACTTTAGCTATGCGTAAAGCAGAGAGATTTCGCACTGACCTAGTTAGACGCGGTGTTTTGTTAGTTCCTGTCATCTTCGGAGAAGGTAGAAAACccaaaattgaaaagaaaggTTTCGGCCCTAAACCAAAGGTTGCTGAGGCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAGCACAATCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTGTATCACCAGCTGAATGGGAACGGTGGATAAGAGATCAGCAGGAGTCTGAAGGAGTTCCAGTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGGCGAGTTCGAAGATCTGGTAAAGGTATACCTGACTGGGAGCAAATTGCGCAGGAGCTGCCGCCAATCGATGCAATTTTAAGCAAGCTGGAAAGATGA 1347 0.4202 MVAMAVVASPQFLCFSSESNWKITTTTKRPCLHLPQFNSILLRSPNNKIHFPLISCSSSSQTPETETETAESCVNLGLQLFSKGKVKDALNQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGVRRFFSIAFTAAAGISLFFNIPRILRAIQGGDGAPDLLETAGNAAVNIGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDIVRPVILAGKKETVTLAMRKAERFRTDLVRRGVLLVPVIFGEGRKPKIEKKGFGPKPKVAEALPSIGEDFEKRAQSVTAQSKLKAEVRFKAEVVSPAEWERWIRDQQESEGVPVGEDVYIILRLDGRVRRSGKGIPDWEQIAQELPPIDAILSKLER 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04217 448 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Tsu07g04217 448 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 448 - -
Tsu07g04217 448 Pfam Tetratricopeptide repeat 70 102 IPR013105 -
Tsu07g04217 448 SUPERFAMILY TPR-like 65 136 IPR011990 GO:0005515
Tsu07g04217 448 Gene3D Tetratricopeptide repeat domain 56 155 IPR011990 GO:0005515
Tsu07g04217 448 Pfam Low psii accumulation1 / Rep27 178 255 IPR021883 -
Tsu07g04217 448 SMART tpr_5 70 103 IPR019734 GO:0005515
Tsu07g04217 448 SMART tpr_5 107 140 IPR019734 GO:0005515
Tsu07g04217 448 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 448 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04217 - - gmx:100784188 705.286