Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04213 ATGCACAAAAACTCCATCTTCCCTAATAACTACACattcccttttcttttcaagTCACTTTCTGACTCAAACAACTTCATTCAATCCCAATGTGTTTACACCCATGTCATTAAACTCGGTCATTTGAATGACCTTTATGTCAATAACTCTCTTCTTGATGTATACGCTTCCTGTGGTTATGTTTCACTTTGTCGACAACTGTTCGATGAAATGTCTCACAGAGATGTTGTGTCTTGGACTGTTTTGATTACAGGTTATCGTTTTTGTGGGAAGTATGATGATGCATTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGTTCCGAATCGGGTCACGATGGTTAATGCTTTGGCGGCTTGCGCTAGCTCTGGTGCTATTGAGATGGGGATTTGGATTGCTGATATGATAAGAAGGAATGGGTTGGAATTGGATGTGATTTTGGGGACGGTTTTGATTGATATGTATGTGAAGTGTGGGAGAGTGGAAGAGGGGTTGAGGGTTTTCAGtaatatgaaggaaaaaaatgtgtttaCTTGGAATGCTGTTATTAAAGGGCTTGCTTTGGCTAAGAGTGGTGATGAGGCTATTTTGTGGTTTAATAGGATGGAGCTTAATGGAGTTAGAGCTGATGAAGTGACTTTGGTTGCGGTACTTTCTGCATGCAGTCATTCAGGTTTGGTGGATAAGGGTCGATTGATCTTTAATATGTTGGTTCATGGAAAGTATGGATTTTTTGCTAATGTCAAACACTATGCTTGTATGGTTGATCTCTTGGCACGCGGTGGTCAAGTACAAGAGGCTTTTGAGATCATGAGATGTATGCCTTTTGAGCCGACGACAGCCATGTGGGGATCGTTGTTGGTTGGTTCCAAAACTCAAGGTGACTTGGAATTCAGTGAGTTTGCAGCTAGAAAACTGGTTGAATTGGAGCCAGATAACACTGCTTATTATGTCCAGCTGTCGAATCTGTATGCAGAGGCGGGAAAATGGGGCGATGTTGAGAGAGTTAGGGAAATGATGAAAGAGAGGGAACTGACTAAAGACTTGGGGTGTAGTTCCGTGGAGGTTGAACACCAAAGGTATGCTAGTGAGCTCTTGGCATAG 1107 0.4128 MHKNSIFPNNYTFPFLFKSLSDSNNFIQSQCVYTHVIKLGHLNDLYVNNSLLDVYASCGYVSLCRQLFDEMSHRDVVSWTVLITGYRFCGKYDDALLVFEQMQYAGVVPNRVTMVNALAACASSGAIEMGIWIADMIRRNGLELDVILGTVLIDMYVKCGRVEEGLRVFSNMKEKNVFTWNAVIKGLALAKSGDEAILWFNRMELNGVRADEVTLVAVLSACSHSGLVDKGRLIFNMLVHGKYGFFANVKHYACMVDLLARGGQVQEAFEIMRCMPFEPTTAMWGSLLVGSKTQGDLEFSEFAARKLVELEPDNTAYYVQLSNLYAEAGKWGDVERVREMMKERELTKDLGCSSVEVEHQRYASELLA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04213 368 Pfam PPR repeat 252 275 IPR002885 -
Tsu07g04213 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Tsu07g04213 368 SUPERFAMILY TPR-like 86 340 IPR011990 GO:0005515
Tsu07g04213 368 Gene3D Tetratricopeptide repeat domain 16 126 IPR011990 GO:0005515
Tsu07g04213 368 Pfam PPR repeat family 74 121 IPR002885 -
Tsu07g04213 368 Pfam PPR repeat family 175 223 IPR002885 -
Tsu07g04213 368 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 362 - -
Tsu07g04213 368 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Tsu07g04213 368 Pfam E motif 296 356 IPR046848 -
Tsu07g04213 368 PANTHER - 1 362 - -
Tsu07g04213 368 Gene3D Tetratricopeptide repeat domain 242 365 IPR011990 GO:0005515
Tsu07g04213 368 Gene3D Tetratricopeptide repeat domain 127 241 IPR011990 GO:0005515
Tsu07g04213 368 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Tsu07g04213 368 TIGRFAM PPR: pentatricopeptide repeat domain 49 77 IPR002885 -
Tsu07g04213 368 TIGRFAM PPR: pentatricopeptide repeat domain 150 176 IPR002885 -
Tsu07g04213 368 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04213 Tsu-Chr7 47752655 47753761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04213 8 357 Glycoside Hydrolase AT3G49170 33.429 6.40e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04213 - - lja:Lj0g3v0239469.1 569.696