Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04188 ATGGCAGGAGGAGAAGAGCGTATTGAGCTTAAATTCCGCATTTATGATGGAACTGATATAGCACATGACACTTATCCAGTATCTACTACAACAGTCAGTACCCTTAAGCAAAAGCTAATTGCTGAGTGGCCTCAAGGCAAAAATGTTGTACCAAAGTCAGTCAATGATGTAAAACTTATACACGCCGGTAAAGTTTTGGAAAACACCAAAACGCTTGCTGATTCCAACATAACTTTCAGTGACATCCCTGGTGCTATTACCATGCATGTTGTAGTACAGCCTCCTATAGCTAAAAAAAAGACAGAGAAGGAGAACAAGCCAAAGTTGAATTCGTGCTCATGCTCATGCACTATCCTATAG 360 0.4056 MAGGEERIELKFRIYDGTDIAHDTYPVSTTTVSTLKQKLIAEWPQGKNVVPKSVNDVKLIHAGKVLENTKTLADSNITFSDIPGAITMHVVVQPPIAKKKTEKENKPKLNSCSCSCTIL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04188 119 Gene3D - 1 101 - -
Tsu07g04188 119 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 119 IPR040015 -
Tsu07g04188 119 CDD Ubl_MUBs_plant 8 95 - -
Tsu07g04188 119 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 119 - -
Tsu07g04188 119 PIRSF MUB 1 119 IPR017000 -
Tsu07g04188 119 ProSiteProfiles Ubiquitin domain profile. 8 77 IPR000626 GO:0005515
Tsu07g04188 119 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
Tsu07g04188 119 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04188 Tsu-Chr7 47547849 47551701 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04188 - - gmx:100818909 168.703