Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04177 ATGTTAAGAATTTGTATGAGaaaaagtCTTCCCTATTCAAGGCCTTTTTTTGCTGAGAGCTTCAACAGATTATTGTCTACTCAGACTGGAAGGAAGCTACAAGATAAGGTAGCACTGATAACTGGGGGAGCTAGTGGAATAGGAAAAGCAGCAGCAACAAAATTCATCAACAATGGTGCAAAAGTAATTATTGCTGATATCCAACAACAACTTGGCCAAGAAACTGCAAAAGAACTAGGACCTAATGCTACCTTCATAACTTGCGACGTCACGAAAGAATCAGACATATCCAATGCAGTTGATTTCGCCGTTTCTGAATACAAACAACTTGATATCATGTATAACAATGCAGGGATACCCTGCAAAACTCCTCCAAGCATTGTTGATCTTGATCTAGAAACATTTGACAAAGTAATGGAAATAAACGTTCGAGGCATTATGACTGGCATCAAACATGCAGCACGTGTAATGATCCCACGTAAAACTGGATCGATTCTATGCACTGCTAGTGTCACTGGAGTGATTGGAGGGATGGCGCAGCATACATATTCAGTATCAAAGTTTGCGGTTATAGGCATTGTTAAATCTTTGGCTTCAGAGCTATGCAGGCATGGGATTCGAGTCAACTGTATATCGCCTTTTGCTATCCCTACTCCGTTTGTTATGAACGAAATGGATGAGATATATCCGCATCTTGATTCGCAGCGAATTGTAGAAATTGTTCATAATGTAGGTGTCCTGAAAGGAGCGAATTGTGAACCTAATGATATTGCTAATGCTGCACTTTACCTTGCATCTGATGATGCTAGGTATATCAGTGGACATAATTTAGTTGTGGATGGAGCTTTCACATCATTTAAGAGTTTAGAATTTCCTGCACCAGATCAAGTGCAATAG 897 0.3969 MLRICMRKSLPYSRPFFAESFNRLLSTQTGRKLQDKVALITGGASGIGKAAATKFINNGAKVIIADIQQQLGQETAKELGPNATFITCDVTKESDISNAVDFAVSEYKQLDIMYNNAGIPCKTPPSIVDLDLETFDKVMEINVRGIMTGIKHAARVMIPRKTGSILCTASVTGVIGGMAQHTYSVSKFAVIGIVKSLASELCRHGIRVNCISPFAIPTPFVMNEMDEIYPHLDSQRIVEIVHNVGVLKGANCEPNDIANAALYLASDDARYISGHNLVVDGAFTSFKSLEFPAPDQVQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04177 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Tsu07g04177 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Tsu07g04177 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Tsu07g04177 298 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 21 290 - -
Tsu07g04177 298 Gene3D - 24 290 - -
Tsu07g04177 298 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 170 198 IPR020904 GO:0016491
Tsu07g04177 298 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 21 290 - -
Tsu07g04177 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 284 IPR036291 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 247 267 IPR002347 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Tsu07g04177 298 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Tsu07g04177 298 Pfam Enoyl-(Acyl carrier protein) reductase 42 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04177 Tsu-Chr7 47444258 47446108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04177 31 285 Miscellaneous Gene Families AT4G05530 30.385 1.23e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04177 - - gmx:100814306 486.493