Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04176 ATGGCGAACTCTCCACCTTCATCTTCACCTCGTGGAGATGAAGTTAGAGATGCAAATGGAGATGAACATCAGGAAACTGAGCTTTTTGAGGATACATTAGTGGTCCATAGTCCCTTAATCGAAACTGAGGTGCAAAATCTCGATCTGAATACCGAGGTGCAAAATCTCGATCTGAATGCTGAGTATGTAGAGGATTCAGAGCCTGTGGAAAGCATGACATTGATAACTGCTGCAACATGTGACAATGAGCCAGAAGTGGTGCTTGACAGTGAGGACGAAGAAATGAATAATGCAGGCAAAGTGACTGTTGCTGAAAGATTTCTTGAGAATGGAAGTAGTCCAGTAGGGAATAATTCTTTGGTGctcttcaaaaagaaattgcCTAAGCTACCATGTGAGCAAGcaaactcaaaatcaaatgCCGCTACTTCTGGAAAATTTGGTACTGGGGACGAAAGAGCTTCAATTGATGCTGAGCCTGAGAGGTTTGATGACAACAACCATAGGTTATATGATGTTCGCTCACCTGAGCCTGGGGATTCAACCGTAGCTGCACTAGGCTTCGTGGATCAGTACTTGTCGTCAATTGATGTGGACATGTTTCAAGGATTTCAAAATGGAAAGATTACTAGGGAGAAATCGCCTAATGTCTCAAGTGCAAGAGGATCAATTAGTCTGGCTAAGAAAATTAAAGCTCGAACTCAAAATGAAGATAAAGACCCTTACGAGTGGGATGACAGCgttcaaaatgaaaaagaagcTGGTATTTTCCGTAAACAGCTTGAAGCATGTTTCAATGTTGGAAGCCATGGACTGGCATATAAGAGAAGACAGAAAAAAGGTAGTCATCCTCCAAACCAAGGAAAATGTAGTGCAAGTAATAGATGTGATGAGAATTTAGTGCAAGAAACAATAATGGAAGCTGACAATAATAACTATCTCAAGGAGTTGGACGTTGAGTCGTGTGCCACAAGAGAGAACGTCGATATTTATTCTAGTGTAGCACGTACGGAAGACGTGTATGATATTGGCTTAGACACTCAAATAGCTGCTGAAGCTATGGATGCCTTAGCAAATCTGTCCCCTGCTGACTTTCATTTAAGTGATGTTCACCAACAAGAGAACGCATTTGATGCGTCTTTGAATGATTTGAAACAAGCTCATCAGAAAAATTCTCCATCTAAAGAGAATCCTGGTTCACATTCTATTGATCTAAAATCCTACAAGAGAAATGTATCTTCTCGTAGATTTAGCAAAGTAACTTCTAGTTCCTCTTGCAAGGACACTAACAATCAGGAATCAAATCCTGTCTCagggaaaatgaaaaaaacaatgGGGAGCAAGTCAACTGTTGAGGGGCAGTTCAAAAATAATGCTAGTCCATCAATATGCGATGAACATGTATCACATGAAGAGGTTTGTTTACCGGGAGAAGATACAAGTTTTCAATCTGCTTCCAAAGAACCCAAAATccacaataaaagaaaatggaCGCGACTGAAACGTCAACCAAGCCATCTTAGAGAGAGGAACAATAATGTTGAGGAGGGTAGTGTTAGATATAAGAGGAAGGGAAATTGTTTAGTGGCAGATTCAGTGAAGATAGACGTTAAGGCGAAACGACTTAATTCATCTATTAGATCATATGGTGTGGCTAGGAAGAGCAGCTTGAAACATCAGGTTGAAGTTAGTCCACAACAAACCGCAACCAgctgtttttcaaagattgattcTTGGGCTTATCCAAAAGGACCAAGAGGGAAAAGAAAGCGAGCTAATGCCCCGAGATTTTTATGTATTgatgataaagaaaacaatgtCTATTCCACTAAAATTCTAGAGGGTCAAGATGATGTGCATAAATCATGTCTTCCCCCAGTTTCAGCAGGTGATgctataaaatttgaaaacctGCATAATATGCAACCCTTGTTGCTGGCACATGTTGAAATATTATCAAACAAGAGTGTTGTACAATCGAGTTCAGAAATTTCAGCTTCAGTTGTTCCAATTGAAGgcataaaaatttcaaatgctAACCATACAAGTAATGAACAGCGCAAAAAGGCGTGTGACAAAAACCTGCCAAAGTCTTCACTTTTGAAGGAACTTATCAGATTAGGAGTTCCCAAATCCACATCAGAAATGATGAGTAAAGATCCAAGACATCGAAGAGATATGACAAATGTCCGAGTTCTGTTTAGCCAACATTTGGATGACATTGTTCTCAAGCAACAACAGAAGATCTTGACACGTCTTAATATATCTACTGCATCAAGCTCAATGGAGGCCACTCATTTCATAGCAGACAAGTTTACACGTACAAAGAATATGCTGGAAACAATGGCTCTTGGAAACTTAGTGTTGACACACTTATGGCTTGAGAGTTGTGGACAAGCCAACTGTTTTATTGAcgagaaaaattatattttgagggatatgaaaaaggaaaaggaaataGGCTTTAGCATGCCAGTTTCTCTTGCTCGAGCAAGACAAAAGCCACTCCTGAAGGGTAAACGAGTCTACATAACACCAAACATCAAACCTAATAAGGAAGTGGTCACGAGCTTGGTTACAGCTGTTCATGGCCAGCTAGTGGATGAAAATCAGATATTTGCAGAAAAGAATGACAATGTCTTAGATGATCTATTGATTCTTTCTTGTGAAGAAGACTTTGCAATATGCCGCCATTTCCTTAAGAGAGGAGCTGCTGTTTACAGTTCAGAGCTTGTTCTGAATGGAATTGTGATCCAGAAATTAGAACTCGAGAGGCATAAACTGTTCGTGAATCAAGTTGAAAAGAATAAACTAGGTAGATGTAATTGGTTTGGGAAGGTTTACAGAAGGCGTTTGATGCCTTTATCTTGA 2871 0.3741 MANSPPSSSPRGDEVRDANGDEHQETELFEDTLVVHSPLIETEVQNLDLNTEVQNLDLNAEYVEDSEPVESMTLITAATCDNEPEVVLDSEDEEMNNAGKVTVAERFLENGSSPVGNNSLVLFKKKLPKLPCEQANSKSNAATSGKFGTGDERASIDAEPERFDDNNHRLYDVRSPEPGDSTVAALGFVDQYLSSIDVDMFQGFQNGKITREKSPNVSSARGSISLAKKIKARTQNEDKDPYEWDDSVQNEKEAGIFRKQLEACFNVGSHGLAYKRRQKKGSHPPNQGKCSASNRCDENLVQETIMEADNNNYLKELDVESCATRENVDIYSSVARTEDVYDIGLDTQIAAEAMDALANLSPADFHLSDVHQQENAFDASLNDLKQAHQKNSPSKENPGSHSIDLKSYKRNVSSRRFSKVTSSSSCKDTNNQESNPVSGKMKKTMGSKSTVEGQFKNNASPSICDEHVSHEEVCLPGEDTSFQSASKEPKIHNKRKWTRLKRQPSHLRERNNNVEEGSVRYKRKGNCLVADSVKIDVKAKRLNSSIRSYGVARKSSLKHQVEVSPQQTATSCFSKIDSWAYPKGPRGKRKRANAPRFLCIDDKENNVYSTKILEGQDDVHKSCLPPVSAGDAIKFENLHNMQPLLLAHVEILSNKSVVQSSSEISASVVPIEGIKISNANHTSNEQRKKACDKNLPKSSLLKELIRLGVPKSTSEMMSKDPRHRRDMTNVRVLFSQHLDDIVLKQQQKILTRLNISTASSSMEATHFIADKFTRTKNMLETMALGNLVLTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPVSLARARQKPLLKGKRVYITPNIKPNKEVVTSLVTAVHGQLVDENQIFAEKNDNVLDDLLILSCEEDFAICRHFLKRGAAVYSSELVLNGIVIQKLELERHKLFVNQVEKNKLGRCNWFGKVYRRRLMPLS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04176 956 MobiDBLite consensus disorder prediction 1 30 - -
Tsu07g04176 956 MobiDBLite consensus disorder prediction 386 407 - -
Tsu07g04176 956 CDD BRCT_PAXIP1_rpt6_like 836 922 - -
Tsu07g04176 956 MobiDBLite consensus disorder prediction 386 446 - -
Tsu07g04176 956 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 716 811 IPR001357 -
Tsu07g04176 956 Gene3D BRCT domain 717 834 IPR036420 -
Tsu07g04176 956 Gene3D BRCT domain 835 936 IPR036420 -
Tsu07g04176 956 MobiDBLite consensus disorder prediction 414 446 - -
Tsu07g04176 956 ProSiteProfiles BRCT domain profile. 722 811 IPR001357 -
Tsu07g04176 956 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 7 936 - -
Tsu07g04176 956 MobiDBLite consensus disorder prediction 14 30 - -
Tsu07g04176 956 CDD BRCT_MDC1_rpt1 730 804 - -
Tsu07g04176 956 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 7 936 - -
Tsu07g04176 956 SUPERFAMILY BRCT domain 711 827 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04176 Tsu-Chr7 47439281 47443593 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04176 - K14972 gmx:102659913 1037.71