Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04160 ATGCGAAGACCAAGAAATATGAGACCGAATATCGTTTCTGAGGCAGGATTGCCTACTAGGTTGAATCAATGGTGGGAAAGTATTCCATTTCTCACTTCTGcaattgttgttgtttgtgGAGTAATTTACTTTCTCTGTCTTTTGGTTGGATATGATTCCTTTATCGAGATATGCTTCTTACCTTCTGCTGTTGTTTCGCGCTTTCAAGtTTATAGGATTTATACCTCCATTATTTTCCATGGTTCACTGCTTCATGTTCTTTTCAACATGATGGCTTTAGTTCCATTGGGCTCTGAGTTGGAGAGGATCATGGGATCAGTTCGTTTGCTATATGTCACTATTCTGTTGGCTACGAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGTGGCACACAATCCTTTTGTTACGAATGATTACCTCATGAATGAGTGTGCTATTGGGTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCGAGGAGTGTGTTTGGGTTGTTTAATGTGCCGGCCAAGTGgtatgcattttttttgttggtagtaTTCCAGCTCCTCATGCAAAATGTCTCACTGCTTGGACACCTTTCTGGCATTGTATCTGGGTTTGCATATacatttggcttgtttaataTCCTCATACCTGGGTCATCCttttattcttcaattgaatCCTCCTCTTGGCTTTCATCATGTGTGAGGCGTCCTAAATTTATTGTTTGCACTGGTGGAAATCCTTCGGGCTATATCCCTACTCATACAAGCCAAAATTCAACTTCTGGTGGATTACTTTCCGGCAATATTTGGGGGAACCTACAATCATTGATGCCTCGAAGGGAAGTGTCTGCTCAGCCTCAGTCCGCTGAGGACAGTAGGTTTCCTGGGAGGGGAAGGACCCTCGGTGCTCCTCAAGGTCAAATTGCTTCTGGTCTTCATTCAGATTCAAATCTCCAAGCTAGACTCTTAGAGGATAGTAGTCCCAATCATCTTTCAGATTCAGCCATTCTGAGCACTGCTCAACGGTCAGCTGAAGGAAGGCATCTAGTCGATAATGTGGCTACAACAGGAGCAGGTGTTCCACCTCATCAGGGGGCAGTTGCTTCAGAAGAAGAGATTAAGAAACTTGTAGCAATGGGCTTTGATAGGACGCAAGTGGAAGTGGCGCTTGCGGCTGCTGATGGTGATCTTAATGTGGCAGTGGAAATACTCATGAGCCAGCAGGGGTGA 1251 0.4205 MRRPRNMRPNIVSEAGLPTRLNQWWESIPFLTSAIVVVCGVIYFLCLLVGYDSFIEICFLPSAVVSRFQVYRIYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSNAIFHVLIALLVAHNPFVTNDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLSGIVSGFAYTFGLFNILIPGSSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTSGGLLSGNIWGNLQSLMPRREVSAQPQSAEDSRFPGRGRTLGAPQGQIASGLHSDSNLQARLLEDSSPNHLSDSAILSTAQRSAEGRHLVDNVATTGAGVPPHQGAVASEEEIKKLVAMGFDRTQVEVALAAADGDLNVAVEILMSQQG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04160 416 CDD UBA_At3g58460_like 377 412 - -
Tsu07g04160 416 SUPERFAMILY Rhomboid-like 26 219 IPR035952 -
Tsu07g04160 416 PANTHER DER1-LIKE PROTEIN, DERLIN 10 415 - -
Tsu07g04160 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 414 IPR015940 -
Tsu07g04160 416 Gene3D - 346 416 - -
Tsu07g04160 416 Gene3D - 22 219 IPR035952 -
Tsu07g04160 416 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Tsu07g04160 416 Pfam UBA/TS-N domain 377 411 IPR015940 -
Tsu07g04160 416 SUPERFAMILY UBA-like 373 414 IPR009060 GO:0005515
Tsu07g04160 416 SMART uba_6 376 413 IPR015940 -
Tsu07g04160 416 PANTHER RHOMBOID-LIKE PROTEIN 15 10 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04160 Tsu-Chr7 47303067 47309524 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04160 - - gmx:100805745 696.041