Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04136 ATGAAATTCGGGGACACATTCAAAGAGTACTTGAAGAAAGAGAAGGAGTTGTTGTTGGATGAGAATTTTACTCATATTGAATATAACAGGTTGAAAAATGTGTTGAAGAGTTGTCAGAATTGTAAAGATAACTCTTCTGATGATGATAAACACCAGTTATGTCATTGTCAATCTTGCTCATTATGCGACCAGAAGTTCTTCTCCGAGCTGACGAAAGAAGCATCAGATATAGCTGGATACTTTAGTTCAAGAGTTCAGCATCTCCTTCACCTTCATATCGCAAAAGGACTGCATAGATATGTATTGCGTTTGcgccagtgttttaaaaatgacAGGGATGCCCTTGTCAAAGAAGGGAGAATTCTAATCAAGTACATTACCATGAATGCAATTGCAGTGAGGAAAATACTTAAGAAATATGATAAAGTGCACAGCTCTATGAATGGCGAGAATTTCAAATCTAAGATGCAGGCTGAGCATATTGAACTTTTACACACACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATTCGAATGGACTAGATGGTTGTAAGCTTGATGGAGTCCGTGGTCACTTTTCATGTGAATTTAATGAAAAGAATGCTGTAATGACATTAATCCTTCCAGAATCTATTAAGCTTGAGTATGATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAATCCATATGCATTGAGTTGTGGACACTTCTTCTGCAAGTCATGTGCTTGCTCTGCTGCACGTGTGATGACTTTCCAAGGCCTTAAAGCCGCAAGTCCAGAGTCAAAGTGTCCTATATGCAGAGAGGTAGGAGTTTATTCCAATGCGGTACGAATGTTAGAACTCAATCTGCTTATGAAAAGAAGGTGCAAAGACTATTGGAAAGAGAGACTAACTAGGGAAAGAGTCGTTTCGTTGAAGCAATCAAGAGAATTCTGGAATGTGCAGTCCACATATGCAATTGGATTGCTGTAG 981 0.3782 MKFGDTFKEYLKKEKELLLDENFTHIEYNRLKNVLKSCQNCKDNSSDDDKHQLCHCQSCSLCDQKFFSELTKEASDIAGYFSSRVQHLLHLHIAKGLHRYVLRLRQCFKNDRDALVKEGRILIKYITMNAIAVRKILKKYDKVHSSMNGENFKSKMQAEHIELLHTPWLIELGAFYLNSNGLDGCKLDGVRGHFSCEFNEKNAVMTLILPESIKLEYDLTCAICLDFVFNPYALSCGHFFCKSCACSAARVMTFQGLKAASPESKCPICREVGVYSNAVRMLELNLLMKRRCKDYWKERLTRERVVSLKQSREFWNVQSTYAIGLL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04136 326 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Tsu07g04136 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Tsu07g04136 326 SUPERFAMILY RING/U-box 213 272 - -
Tsu07g04136 326 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Tsu07g04136 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 324 - -
Tsu07g04136 326 ProSiteProfiles SPX domain profile. 1 154 IPR004331 -
Tsu07g04136 326 CDD SPX_BAH1-like 2 149 - -
Tsu07g04136 326 Pfam RING-type zinc-finger 221 267 IPR027370 -
Tsu07g04136 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 320 IPR013083 -
Tsu07g04136 326 SMART ring_2 221 269 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04136 Tsu-Chr7 47167293 47170346 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04136 K16275 - gmx:100781704 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04136 07 47167293 47170346 Tsu07g04136 07 47167293 47170346 ECH