Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04135 ATGTCAAATTTCTTCAGCTCCTCATGGTTATGGCTTTCTCGTTTTCGTTCTTCCAAATACTTGTTCCACCGCACTCTCCATACAATCACCGTCACACCTCACAAAACCGCACCGACTTCAAATCTCTTCAACTCACACAGATCAACTAATCCATGGACCACATGGTCAATTCCTTTGGCTCTCGCTCTCTCTGCTGGATCACTTTCTCTTCAACCTCATTCCGATAACTCATTCTCTGACTCCTTTGACACCAATAATAACAGTGATGTAAGGATTGGGGGCAAAGGTAGCACACAACATGTTGTTAAGGGATCACAAAAAGCGTTCCCACAAGAGCTTCTCGAGGAGTTGAAAATCATCTGTGAGGATAACATATCACTTGATTATGACGAAAGATATATGCATGGAAAACCACAACACAGTTTTCACCAGGCTGTCAATATCCCAGATGTGATTGTTTATCCAAGATCTGAGGAGGAGGTTTCCAAGATTGTCAAATCCTGCAACAATCATAAGATTCCCATTGTACCTTATGGAGGAGCTACATCAATCGAGGGTCACACTTTATCCCCCCATGGAGGGGTTTGTATTGACATGTCATCAATGAAAAAAGTAAAAGCATTGCATGTTAATGACATGGATGTGGTTGTTGAGCCTGGAATTGGGTGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCAAGTATTGGAGGGATGTGTGCTACACGCTGCTCTGGTTCGTTAGCTGTGAGGTATGGAACTATGCGTGATAACGTCATCAGTCTCAAGGTAGTTCTTGCCAATGGAGATATTGTGAAGACTGCATCGCGGGCTAGGAAGAGTGCTGCAGGGTATGACCTGACACGCTTGATGATTGGGAGTGAAGGAACTCTTGGTGTCATAACAGAAGTAACACTGCGGCTTCAGAAAATTCCCCAGTTTTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACTATGATGTCTGGAATACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTCAAAGCTATTAATATTGCTAATGGGAAGAGTTTTCCTGAATCTCCAACTTTGATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACCCAGATTGTACGAAAAATTGTTTCTGAGCACAATGGCTCGGATTTTGTATTTGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTAAGGAAGGAAGCACTTTGGGCTTGCTTTGCTATGGAACCTAATAAGGAGGCAATGATTTCGGATGTATGTGTTCCTTTATCTCGTCTAGCTGATTTAATTTCAAAGTCTAAAAGGGAGCTGGATGCATCGCCACTGGTTTGCACAGTGATTGCCCATGCTGGTGATGGTAATTTCCACACAGTAATTCTATTTGATCCCACGAAAGAAGAAGAACAGCAGGAAGCAGAGAGACTCAACAATTTTATGGTTCATGCTGCCTTGTTGTTGGAAGGAACTTGTACCGGTGAACATGGTGTTGGCACAGGAAAAATGAAGTATCTTGAAAAAGAACTAGGAGTGGAAGCATTGAGgacaatgaaaaaaataaaatcagtcCTAGATCCTAACAATATCATGAATCCAGGAAAGCTCATCCCTCCCCATGTTTGTTTGTAA 1713 0.4197 MSNFFSSSWLWLSRFRSSKYLFHRTLHTITVTPHKTAPTSNLFNSHRSTNPWTTWSIPLALALSAGSLSLQPHSDNSFSDSFDTNNNSDVRIGGKGSTQHVVKGSQKAFPQELLEELKIICEDNISLDYDERYMHGKPQHSFHQAVNIPDVIVYPRSEEEVSKIVKSCNNHKIPIVPYGGATSIEGHTLSPHGGVCIDMSSMKKVKALHVNDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQFSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKSFPESPTLMFEFIGTEAYAREQTQIVRKIVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMEPNKEAMISDVCVPLSRLADLISKSKRELDASPLVCTVIAHAGDGNFHTVILFDPTKEEEQQEAERLNNFMVHAALLLEGTCTGEHGVGTGKMKYLEKELGVEALRTMKKIKSVLDPNNIMNPGKLIPPHVCL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04135 570 ProSiteProfiles PCMH-type FAD-binding domain profile. 145 322 IPR016166 GO:0071949
Tsu07g04135 570 Pfam FAD binding domain 149 285 IPR006094 GO:0050660
Tsu07g04135 570 Gene3D - 524 564 IPR016171 -
Tsu07g04135 570 Pfam FAD linked oxidases, C-terminal domain 322 563 IPR004113 GO:0003824|GO:0050660
Tsu07g04135 570 Gene3D - 109 342 IPR016169 -
Tsu07g04135 570 SUPERFAMILY FAD-binding/transporter-associated domain-like 116 323 IPR036318 GO:0050660
Tsu07g04135 570 Gene3D - 442 523 - -
Tsu07g04135 570 PANTHER D-LACTATE DEHYDROGENASE 27 566 - -
Tsu07g04135 570 SUPERFAMILY FAD-linked oxidases, C-terminal domain 327 566 IPR016164 GO:0003824|GO:0050660
Tsu07g04135 570 PANTHER D-LACTATE DEHYDROGENASE, MITOCHONDRIAL-RELATED 27 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04135 Tsu-Chr7 47156996 47165530 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04135 K00102 - gmx:100803612 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04135 07 47156996 47165530 Tsu07g04135 07 47156996 47165530 ECH