Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04120 ATGGAATATTCCAATTCCATCTATggtctcttcttcttccttttccttCTTCCTATCCTTTCTGCATTCCCTCACAATTCAACCTCAACCGTTCAGATCAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCTCATTACACCGAACTCGCTGAACTCGTTGAAAAAGCACTTCTCCTTCAGAAACTTGAAGAAGCTGTTGGTAATCACAATATCACAATCTTCGCTCCTAGAAATCAAGCTTTAGAACGTGACCTAGATCCTGAATTCAAAAGATTTCTTCTCGAACCACGGAATCTTAGGTCACTTCAAACGCTTTTGATGTCTCACATTCTTCCTTCACGAATCGCTTCAACTCATTGGCCGGAAAATAGCCTCCGTCATCAAACACTCTCCAACCACCGTCTCCATTTAACAGTAAACCCTTCCGGTAAGAAATCTGTCGATTCCGCTGAGATCCTCCGTGCCGACGATGTTATTCGCCCCGACGGTGTTATCCACGGTATCGAACGTCTCATTGTACCTCGCTCCGTACAGGAAGATTTCAACCGGAGAAGAAATCTTCGTGATATATCAGCGATTCTCCCGGAAGGAGCACCGGAGGTAGATCCAAGAACAAACCGATTAAAAAAACCAGCACCAGTCCCTGCCGGAGCTCCACCGGTGCTTCCAATCTACGATGCTTTAGCACCAGGTCCGTCTCTAGCTCCGGCACCAGCACCAGGACCGGGAGGAGCACGTCATCACTTTAACGGAGAACGTCAAGTAAAGGATTTCATTCAGACACTTCTTCATTACGGTGGTTACAACGAAATGGCGGATATTCTTGTTAACCTAACGTCTCTTGCAACGGAAATGGGTCGTTTAGTTTCTGAAGGTTATGTTTTAACCGTTTTAGCTCCAAACGACGAAGCAATGGCGAAATTAACGACCGATCAATTGAGTGAACCAGGTGCACCGGAACAGATCATATACTATCATATAATTCCTGAGTATCAAACGGAGGAAAGTATGTATAACGCCGTTAGGAGATTTGGGAAAATTAGTTACGATACACTCCGTTTGCCTCATAAGGTTGTTGCTCAGGAATCTGACGGTTCTGTTAAATTCGGTCACGGTGATTCTTCTGCTTATTTGTTTGATCCTGATATTTACACCGACGGAAGAATTTCCGTTCAGGGTATTGACGGTGTTCTTTTACCACTGGAGGAAGAGAATGAAGATGAATCATCCTCAATTCGCCGTGCAAAAATTCCACTTGTTAAAGTTGCTACTAAACCAAGGAGAGGGAAATTGCTGGAACTTGCTTGTAGCATGGTTGGAGTCTGCTCATGA 1335 0.4382 MEYSNSIYGLFFFLFLLPILSAFPHNSTSTVQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPSRIASTHWPENSLRHQTLSNHRLHLTVNPSGKKSVDSAEILRADDVIRPDGVIHGIERLIVPRSVQEDFNRRRNLRDISAILPEGAPEVDPRTNRLKKPAPVPAGAPPVLPIYDALAPGPSLAPAPAPGPGGARHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKISYDTLRLPHKVVAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLLPLEEENEDESSSIRRAKIPLVKVATKPRRGKLLELACSMVGVCS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04120 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 9 442 IPR044654 -
Tsu07g04120 444 SUPERFAMILY FAS1 domain 33 176 IPR036378 -
Tsu07g04120 444 ProSiteProfiles FAS1/BIgH3 domain profile. 34 173 IPR000782 -
Tsu07g04120 444 Pfam Fasciclin domain 281 401 IPR000782 -
Tsu07g04120 444 Pfam Fasciclin domain 46 175 IPR000782 -
Tsu07g04120 444 ProSiteProfiles FAS1/BIgH3 domain profile. 256 399 IPR000782 -
Tsu07g04120 444 SMART fasc_3 73 176 IPR000782 -
Tsu07g04120 444 SMART fasc_3 297 402 IPR000782 -
Tsu07g04120 444 Gene3D FAS1 domain 38 175 IPR036378 -
Tsu07g04120 444 SUPERFAMILY FAS1 domain 235 402 IPR036378 -
Tsu07g04120 444 Gene3D FAS1 domain 275 401 IPR036378 -
Tsu07g04120 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 9 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04120 Tsu-Chr7 47039484 47042716 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04120 - - gmx:100818575 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04120 07 47039484 47042716 Tsu07g04120 07 47039484 47042716 ECH