Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04114 ATGACCCGATTAACGGAAAAGCTCCGTTTGTCTTCCTTGTTCATCAAACCGACCcgttttctctctcttctttctctctctactctCCATCATCTCTGCAACTCCCTCACTCGTTTTCTCTTCTCCCAAACCCTACCTTTCTTCTCCATGGACAACAACATCAATCTCTTCTCCGATAACGTCGATTACTTCGACGATGACTTCGATTCCTCTTACTCTCTTCGTCCTAACCGTCGCTTACTTCAACAAGATCATCGCGATTTCTCCGTTGAGAAGGTTTACTTGCTTCCCTATAGGTGGTGGATTGATGCAGAAGTTGAAGGTGATCGTGTGGAAGGTGTTTTGTATACAGTTTGTTCGAATTTTGATTCGGAGTCTGAAATTTTGCTGAGTCTGAAGAAGGAAGAGGATCGTGAGAAGATTAAGAGTTTGGAGGTTGGTGTTTCAGGTCGTCATTATGCTTTGGTTCCTGAAGGACTTTGGTTGCGTGCTCTCAAACGGTATAATGATTTTAATAATGCAGTGAAGGATTTTGGGAGAATCTTCTATGCAGAAGAGGGTTTGCCAGATTTGTTTCCCTTGCAACTTAGGATATTTGTTTCATGGGAAACCAGTTCACTTGTAGCAAAGATAAGCCAAGAGGAAAATGTGCCTGACTTCTACAAGAAAGCTTGTGACATCTTCAATCCTGCATATAACTCACTGTATATTTGGGACTTCTCTGGGCAGACAACCCAGCTTTTAGTAAATGACAATGCTAGGGTGCCAAATGATTCTCTTGGTCAACCTGGAAAAGAGGTAGTTCTTCTGGAGTTACAAGTTCACGGACTTTCAGATTCAATGAGGGGTAGTCAGAGCAATGGGATGATTTCAGATAGCTCTCAGATGGAATGTTCTTCTGACGGTGACCCTGTTACGATGAATGGAAGCACCGGCAATGTTATCCCCTACGTAACAGCAAACAACTATTTTCAAGACAGTAGCTATAGAGCAGTTCGATCTTTGGGCTTGACAGGACTACATAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGTGATTATCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAGCATTGTGGGTTCCTGGAGCATCACCTGTGGCACCAAGAATGTTCAAGATGAAACTATCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAACATGATTCTCAAGAACTACTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGGAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCAATAGTAGTTGATTTGTGCCAAGGTCAGTTCCGGTCGACATTGATTTGCCCTTTTTGCAAGAAGGTTTCTATCACCTTTGACCCTTTTATGTACCTATCTCTGCCATTACCTTCTACAACGATACGGACCATGACTGTGACAATCATGAGTACTGATGGGATCACATTGCCTTCTGCAATTACTGTAACAGTGCCTGAACGTGGAACACTTAAGCATCTTATTGGGGCCTTAACTGCTGTTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAGTAAGATTTTTCGGGTATACGAGGAATCTGACTCATTAGCTGACATTAGAGATCAAGACACACTTGTCGCTTACCGAGTGCAGAAGTATACTGAAGATAGCATCTTGATTTTTTTCACGCATGAACGTTTGGTGGAGAGGAAGGATAGgtttgaaaatatattgtttggtATTCCAGTTGCAACAAGGCTGTCTGGTATTTCTTGCGGACGCGATGTTCATAGGGGGTTTCTGAATTTAATCAATCCATTTCTGATGCAAAACACTGAAGAAACAATAGATGAATATGATAAGGATGacaatgttgttgttgatgatgatgatactaAAAAACCAAATGAAGTTGATGAATCAGGCGAAACTAATAACTCTGAAGCAATAGAAAGTGATGCAGTATCGAACAGCGGAGCAGAGGATGAGATACATTTAGTGACTGACTTTGAATTCTATTTAATACTTTCTGGGAGATTAAGTGACATTAAGATAACATCGAATGAACCATTACCTGTCGCAATGTTGTCCAGAAAGTTGGAGGAGCTACAGCTACTTGTTGTATGGTCAGATGAGATGCTTAAAAAGTATGACACAAACCTGCTTGGTTCATTGCCCGAGGTTTTCAAACCCCAATTCACCAAGAGAACACAAGAATCAGTTTCTATTTACAAGTGCCTGGAAGCCTTCTTGAGAGAGGAACCTCTTGGGCCTGAAGACATGTGGTACTGTCCCACCTGTGAAAAACCTCAGCAAGCAACTAAAAAGTTGGACCTTTGGAGATTGCCTGAAATCCTAGTTGTTCATTTGAAGAGGTTCTCGTACAACCGATACTTCAAGAACAAGCTGGAAACTTTCGTTGACTTCCCAATTAATGATCTGGATTTGTCAACTTATGTCGCTCATAGGAGTTATCCATCTCCTAACTGCTATATGTTGTATGCAATTATTTGTCACTATGGCGGGTTAGGAGGAGGTCACTATACAGCGTTTGTCCGTTATGGCCATGATAAATGGTATGAGTTTGATGATAACAGGGTTTCCCCTGCTGATGAGGAGATGATAAAGAGTTCTGCTGCTTATGTTCTTTTCTACAAGAAAGTTTAG 2826 0.402 MTRLTEKLRLSSLFIKPTRFLSLLSLSTLHHLCNSLTRFLFSQTLPFFSMDNNINLFSDNVDYFDDDFDSSYSLRPNRRLLQQDHRDFSVEKVYLLPYRWWIDAEVEGDRVEGVLYTVCSNFDSESEILLSLKKEEDREKIKSLEVGVSGRHYALVPEGLWLRALKRYNDFNNAVKDFGRIFYAEEGLPDLFPLQLRIFVSWETSSLVAKISQEENVPDFYKKACDIFNPAYNSLYIWDFSGQTTQLLVNDNARVPNDSLGQPGKEVVLLELQVHGLSDSMRGSQSNGMISDSSQMECSSDGDPVTMNGSTGNVIPYVTANNYFQDSSYRAVRSLGLTGLHNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRALWVPGASPVAPRMFKMKLSNFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDGEVAEEYWRNHLARNDSIVVDLCQGQFRSTLICPFCKKVSITFDPFMYLSLPLPSTTIRTMTVTIMSTDGITLPSAITVTVPERGTLKHLIGALTAVCSLRDDETLLVAEIYKSKIFRVYEESDSLADIRDQDTLVAYRVQKYTEDSILIFFTHERLVERKDRFENILFGIPVATRLSGISCGRDVHRGFLNLINPFLMQNTEETIDEYDKDDNVVVDDDDTKKPNEVDESGETNNSEAIESDAVSNSGAEDEIHLVTDFEFYLILSGRLSDIKITSNEPLPVAMLSRKLEELQLLVVWSDEMLKKYDTNLLGSLPEVFKPQFTKRTQESVSIYKCLEAFLREEPLGPEDMWYCPTCEKPQQATKKLDLWRLPEILVVHLKRFSYNRYFKNKLETFVDFPINDLDLSTYVAHRSYPSPNCYMLYAIICHYGGLGGGHYTAFVRYGHDKWYEFDDNRVSPADEEMIKSSAAYVLFYKKV 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04114 941 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 338 941 IPR028889 -
Tsu07g04114 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 884 901 IPR018200 GO:0004843|GO:0006511
Tsu07g04114 941 MobiDBLite consensus disorder prediction 280 303 - -
Tsu07g04114 941 Gene3D Cysteine proteinases 322 567 - -
Tsu07g04114 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 941 - -
Tsu07g04114 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 941 - -
Tsu07g04114 941 MobiDBLite consensus disorder prediction 672 710 - -
Tsu07g04114 941 CDD Peptidase_C19R 794 939 - -
Tsu07g04114 941 Pfam Ubiquitin carboxyl-terminal hydrolase 338 938 IPR001394 GO:0004843|GO:0016579
Tsu07g04114 941 Gene3D Cysteine proteinases 660 941 - -
Tsu07g04114 941 MobiDBLite consensus disorder prediction 679 694 - -
Tsu07g04114 941 SUPERFAMILY Cysteine proteinases 336 940 IPR038765 -
Tsu07g04114 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 339 354 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04114 Tsu-Chr7 46989423 46996925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04114 795 941 Miscellaneous Gene Families AT4G31670 34.000 2.67e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04114 - K21343 cam:101507058 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04114 07 46989423 46996925 Tsu07g04114 07 46989423 46996925 ECH