Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04079 ATGGCCTATCCCTACATTCTCTTTATCCTCTCTTTCCTTCTCACATTCTCTTCTTCCACCCCTAACCCAAACACCATCACCCTCCCCCTTTCCCCTCTTTCCCCCAAATCTCAATCCTCAGATCTCTTCCACTCTCTCAAAACAGCAGCTTCATCATCCCTATCAAGAGCTCACCATCTCAAAACccaaaaaccaaatcaaaataaaaaatcacccAAATCATCTTCCACAACCAACACACAAATCTTCTCCAAAAGCTATGGTGGTTACTCCATTAATCTCAATTTTGGAACACCATCACAAACCTTATCTTTTGTCTTAGACACAGGTAGTAGCCTTGTATGGTTCCCCTGTTCCTCTCATTACCTCTGTTCCAATTGTAACTTCCCAAACATAAACCCAACAAAAATCCCATCTTTCATTGCCAAAAACTCATCTTCCTCAAAAATCCTAGGTTGCACAAACTCAAAATGCGGCTACATCTTTGGACCCGACATTGAATCTCGTTGCAAAGGTTGTaatccaaaaacacaaaactgTAACAACATAACTTGTCCTGCTTATATAGTTGAATATGGTTTAGGTTCAACCATTGGTTTCTTTCTATTAGAAAATCTAAATTTTcccggaaaaaaaattcaagattttCTCGTAGGTTGTTCTATTTTATCAACCCGACAACCCTCCGGTATAGCAGGTTTCGGTCGCGGCAAAGATTCTCTTCCGTCGCAAATGGGTCTTAAAAGATTCTCTTACTGTTTACTTTCTCATCAATTCGACGACTCGCCGGAAAATAGTAACCTCGTTTTACAAGTTTCCTCCACCGGCGatacaaaaacaaaaggatTAAGCTACACTCCGTTTCGAAGAAACCCATCAACGAATAACACTGCATTTCTTGAATACTATTACGTGAATCTACGAAGTATTGTTATCGGAGGTAAAAGAGTTAAGATTCCGTTAACCGTTTCTGAACCAGGAATTGACGGTAATGGTGGAACTATCGTTGATTCTGGATCAACGTTTACTTTTATGGAAAAAGAAATCTTCGACTTGGTTTCGAAAGAGTTTGAAAATCAACTTAAGAATTTCACGAGAGCGAAAGAGATTGAAGGAACATCAGGGTTGAGTTTATGTTATGATTTCACCGGAGTTATAAAAACGGTGTCGTTTCCGGAGGTAGTGTTACAGTttaaagggggtgcaaaaatgAAGTTACCAATTgagaattatttttctttagttGGTGAAGGGGATGTTGCTTGTTTAACTGTTGTTACTGATGGAGTTGCGGCGCCGGAGAGAAGTGGTGGTCCGGCGATAATTTTAGGGAATTATCAGCAACAGAATTTTAATGTTGAATATGATTTGGAAAATGATAGGTTTGGATTTGGACCTCAGAGTTGTCAAAAAAGtgcttaa 1422 0.3629 MAYPYILFILSFLLTFSSSTPNPNTITLPLSPLSPKSQSSDLFHSLKTAASSSLSRAHHLKTQKPNQNKKSPKSSSTTNTQIFSKSYGGYSINLNFGTPSQTLSFVLDTGSSLVWFPCSSHYLCSNCNFPNINPTKIPSFIAKNSSSSKILGCTNSKCGYIFGPDIESRCKGCNPKTQNCNNITCPAYIVEYGLGSTIGFFLLENLNFPGKKIQDFLVGCSILSTRQPSGIAGFGRGKDSLPSQMGLKRFSYCLLSHQFDDSPENSNLVLQVSSTGDTKTKGLSYTPFRRNPSTNNTAFLEYYYVNLRSIVIGGKRVKIPLTVSEPGIDGNGGTIVDSGSTFTFMEKEIFDLVSKEFENQLKNFTRAKEIEGTSGLSLCYDFTGVIKTVSFPEVVLQFKGGAKMKLPIENYFSLVGEGDVACLTVVTDGVAAPERSGGPAIILGNYQQQNFNVEYDLENDRFGFGPQSCQKSA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04079 473 ProSiteProfiles Peptidase family A1 domain profile. 90 465 IPR033121 -
Tsu07g04079 473 PANTHER OS07G0603500 PROTEIN-RELATED 6 469 - -
Tsu07g04079 473 CDD pepsin_A_like_plant 89 469 IPR034161 -
Tsu07g04079 473 Pfam Xylanase inhibitor C-terminal 303 465 IPR032799 -
Tsu07g04079 473 Gene3D Acid Proteases 61 264 IPR021109 -
Tsu07g04079 473 PANTHER BNACNNG47670D PROTEIN 6 469 - -
Tsu07g04079 473 MobiDBLite consensus disorder prediction 51 79 - -
Tsu07g04079 473 Pfam Xylanase inhibitor N-terminal 90 265 IPR032861 -
Tsu07g04079 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Tsu07g04079 473 Gene3D Acid Proteases 270 473 IPR021109 -
Tsu07g04079 473 SUPERFAMILY Acid proteases 86 469 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04079 Tsu-Chr7 46696213 46698056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04079 88 471 Miscellaneous Gene Families AT1G44130 24.818 9.65e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04079 - - gmx:100805927 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04079 07 46696213 46698056 Tsu07g04079 07 46696213 46698056 ECH