Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04062 ATGGCTTCAATTCCCAAAAgACTTGAAGGTAAAGTAGCAATAATCACAGGAGGTGCTAGTGGAATTGGTGCTGCAACTGCTAAACTATTTGTTGAACATGGTGCTAAAGTTATCATTGCTGATATTCAAGATGAATTAGGCCAATCACTTTGCAATGAACTTGCCACAAAAAACATTCTCTATGTTCATTGTGATGTAACAAATGAATCCGACATAAAAAACGTAGTAGATACCGCGGTTTCAAATTACGGTAAGCTTGACATCATGTTTAATAATGCTGGTACCTCAGATGACAAAAACAGAACACTTGTGGATTATGATAGTGAAGCTTTCAAAAAGGTATTTGATGTTAATGTTTATGGAGCTTTCTTGGGTGCTAAGCATGCTGCTAAGGTAATGATCCCACAAAAAAAAGGTGTTATTCTTATAACTGCAAGTGTTGCTACAGCAACTGCTGGTGAATCAACACATGCTTATTCATCTTCAAAGTATGCATCAGTTGGGCTAATGAAGAATTTGTGTGTAGAATTAGGACAATATGGGATTAGAGTTAATTGTATTTCACCAGGTGCTATTCCAACTCCAATTTTAACAAATGCATTGAATATGAACAAGAATGAAATGGAGAAAGTTTTGTCCTCAGTTGGTGTGTTGAAAGAAGCTATTCTTGAAGTTGAAGATATAGCTAATGCAGCACTTTATTTAAGCAGTGATGAATCAAAGTTTGTGAATGGAGTTAACATTGTTTTGGATGGAGGTTATAGCACTACCAATATGTCATTCACTTCTGCACTTATCAAACTTTTGATGAATGGTTCCACCAATCACATTGATCGGTAA 840 0.356 MASIPKRLEGKVAIITGGASGIGAATAKLFVEHGAKVIIADIQDELGQSLCNELATKNILYVHCDVTNESDIKNVVDTAVSNYGKLDIMFNNAGTSDDKNRTLVDYDSEAFKKVFDVNVYGAFLGAKHAAKVMIPQKKGVILITASVATATAGESTHAYSSSKYASVGLMKNLCVELGQYGIRVNCISPGAIPTPILTNALNMNKNEMEKVLSSVGVLKEAILEVEDIANAALYLSSDESKFVNGVNIVLDGGYSTTNMSFTSALIKLLMNGSTNHIDR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 133 149 IPR002347 -
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 218 238 IPR002347 -
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Tsu07g04062 279 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Tsu07g04062 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Tsu07g04062 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 IPR002347 -
Tsu07g04062 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Tsu07g04062 279 Pfam Enoyl-(Acyl carrier protein) reductase 17 255 - -
Tsu07g04062 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Tsu07g04062 279 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 2 266 - -
Tsu07g04062 279 Gene3D - 2 270 - -
Tsu07g04062 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 266 - -
Tsu07g04062 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 256 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04062 Tsu-Chr7 46574377 46575972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04062 8 265 Acyl Lipid Metabolism Gene Families AT1G63380 29.213 1.07e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04062 - - aprc:113863381 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04062 07 46574377 46575972 Tsu07g04062 07 46574377 46575972 ECH