Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04061 ATGTATGAAGCTCTGAATGCACAGAACACGAAAAGCGATATCATGGCAAGTTCAAGCCCTGCAGTCAGCAGAAGACTAGAAGGTAAAGTGGCGTTGATAACCGGGGGAGCTAGTGGAATCGGCAAACGCACTGCAGAAATATTTGCAGAACAAGGAGCCAAAGTAGTGATTGCAGACATCCAAGATGAACTTGGACACTCAGTTGCTCAATCCATAGGATCGTCAACATGTTTATTCGTACACTGTGATGTAACTGATGAGAACCAAATCAAAAACGCTGTGGACACAACCGTACAAACGTACGGAAAACTCGACATCATGTTCAACAATGCTGGCATAGGTGGCCCTAACAACTCTCGAATCATTGACAACGATAAAGCAGATTTCGAACGCGTACTAAGTGTCAATCTCACAGGTGTTTTCCTCGGCATCAAACACGCAGCACAAGCCATGATCCCAGCTCGCACTGGTAGCATTATAAGTACTTCTAGCATAAGCTCTTATGTTGGTGGTGCTGCCTCACATGCTTATTGTTGTGCAAAGCATGCCGTGGTTGGTTTAACTAAAAATGCAGCAGTTGAACTCGGACAATTTGGGATTAGAGTTAATTGTTTGTCTCCTTACGCTTGCGCAACTCCTTTGGCAACACAATTTGTCGGATTGAATGATGATATGCTTGAAAGTACCATGAGCTTATTGGCTAATCTTAAGGGTGTGACATTTAAAACCGATGATGTTGCGAATGCAGCACTTTATTTCGCTAGTGATGATTCGAGGTATGTGAGTGGCCATAATTTGCTCATAGATGGAGGATTTAGCATTGTTAATCCATCCTTTCACATGTTTCAATATTCATCAGAGTCTTGA 867 0.4279 MYEALNAQNTKSDIMASSSPAVSRRLEGKVALITGGASGIGKRTAEIFAEQGAKVVIADIQDELGHSVAQSIGSSTCLFVHCDVTDENQIKNAVDTTVQTYGKLDIMFNNAGIGGPNNSRIIDNDKADFERVLSVNLTGVFLGIKHAAQAMIPARTGSIISTSSISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYACATPLATQFVGLNDDMLESTMSLLANLKGVTFKTDDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFHMFQYSSES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 236 256 IPR002347 -
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 30 47 IPR002347 -
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 102 113 IPR002347 -
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 177 196 IPR002347 -
Tsu07g04061 288 PRINTS Glucose/ribitol dehydrogenase family signature 198 215 IPR002347 -
Tsu07g04061 288 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 275 IPR036291 -
Tsu07g04061 288 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 21 284 - -
Tsu07g04061 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Tsu07g04061 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 196 IPR002347 -
Tsu07g04061 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 102 113 IPR002347 -
Tsu07g04061 288 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 21 284 - -
Tsu07g04061 288 Gene3D - 16 285 - -
Tsu07g04061 288 Pfam Enoyl-(Acyl carrier protein) reductase 35 273 - -
Tsu07g04061 288 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 164 192 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04061 Tsu-Chr7 46566458 46570761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04061 26 282 Acyl Lipid Metabolism Gene Families AT1G63380 30.451 1.78e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04061 - - gmx:100802915 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04061 07 46566458 46570761 Tsu07g04061 07 46566458 46570761 ECH