Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04040 ATGGTTCTTTCAAAGGGTGTCATAATATTTGTAGCTGTTATTTCCATTAATTTGTTGCTAATAAACAATGGTGTTGAAGCATTTCATGAAATATATCCTCATCTTCAATCCGTTTCAACTCTTTCCGTGAGTGAATTGCATAGAACTGGATATCATTTTCAACCTCCCAGGAACTGGATCAACGATCCAAATGGACCTATGTTTTACAATGGATACTATCACCTATTCTACCAATACAATCCAAAAGGATCTGTGTGGGGAAACATTATATGGGCTCATTCAGTATCAAAGGATCTTATAAACTGGGAAGGAGTTGAACCTGCTATTTACCCATCCAAACCCTTTGACAAATATGGATGTTGGTCCGGGTCGGCTACCATAGTTCCGGATAAGGGACCCATTATCCTTTACACGGGAATTGTTGACGAAAAAAATACTCAAGTCCAAGTTTATGCTATACCCGAAGATATAAACGATCCATTTCTTAGAAAATGGGTTAAACCTGATGAACACAACCCTGTCGTGATTGCGGAAAAAGGGGTAAATGGTAGCGCGTTTCGTGACCCAACAACAGCATGGAAGGATAAAAGTGGACATTGGAAAATTTTGGTTGGTAGTAGAAGAAAACATAGAGGGGTGGCCTATTTATATAGGAGTAGGGATTTTAAGAAATGGGTTCGGGCTAAACATCCGATCCATTCGGCCGCTAAAACGGGTATGTGGGAGTGTCCCGATTTTTATCCGGTTTTATTGAAAGGTAAAGAAGGGTTGGATACATCAATTGAAGGTGATCATGTTAAACATGTGTTAAAGAGTAGTCTTGACATGACTAGATTTGAGTACTATACATTGGGTAAATATAATAGTGATGAGGATAAGTATGTTCCAAGTAATACTTCAGAAGATGGTTGGGGTGGCCTTAGATATGACTATGGTAACTTTTATgcttcaaaatcattttttgatCAAAATAAGAATCGTAGGATCCTTTGGGGTTGGGCTAATGAGTCTGACTCCCAACATGATGATGTTAAAAAAGGATGGGCTGGAATTCAGGCAATACCAAGAGTTGTGTGGCTTGATTCTAATGAGAGACAATTGGTACAATGGCCTGTTGAAGAATTGAATCAACTCAGAGATAAGGAAGTTACTATGAACAGTAAAAAGCTTGAAAAGGGTGATAAAGTAGAAGTAGCTGGAATAACTGCTGCACAgGCAGATGTTGAAGTTACTTTCTCATTTGCAAGCTTGGAAAAAGCAGAGGATTTTGATCCAAGTTGGGTAAACGCACAAGATCTTTGTTCTCTAAAAGGTTCAGAAGTTCAAGGTGGGCTTGGGCCTTTTGGGCTTTTAACTTTGGCTTCAGAAAATTTGCAAGAGTTCACTCCTGTGTTTTTTAGAGTCTTCAAAGCTCCAAATAAGCATGTAGTTCTCTTGTGCTCTGATGCTAAAAGTTCTTCTTTGAAGAGTGAAATGTACAAGCCATCATTTGGTGGATTTGTAGATGTAGATTTAGCTACAAACAAACTTTCACTTAGGAGTTTGATTGATCACTCAGTAGTTGAAAGTTTTGGAGAAGGAGGGAAAACAAACATTTTATCTAGGGTTTATCCGGAACTAGCCATAACACATCAAGCTCATTTGTATGTGTTTAACAATGGTACTGAACCAATCACTGTGGAGACTCTTTCAGCATGGAGTATGAAGTCTGCTAATATCAAAAGTAGTTAG 1731 0.3801 MVLSKGVIIFVAVISINLLLINNGVEAFHEIYPHLQSVSTLSVSELHRTGYHFQPPRNWINDPNGPMFYNGYYHLFYQYNPKGSVWGNIIWAHSVSKDLINWEGVEPAIYPSKPFDKYGCWSGSATIVPDKGPIILYTGIVDEKNTQVQVYAIPEDINDPFLRKWVKPDEHNPVVIAEKGVNGSAFRDPTTAWKDKSGHWKILVGSRRKHRGVAYLYRSRDFKKWVRAKHPIHSAAKTGMWECPDFYPVLLKGKEGLDTSIEGDHVKHVLKSSLDMTRFEYYTLGKYNSDEDKYVPSNTSEDGWGGLRYDYGNFYASKSFFDQNKNRRILWGWANESDSQHDDVKKGWAGIQAIPRVVWLDSNERQLVQWPVEELNQLRDKEVTMNSKKLEKGDKVEVAGITAAQADVEVTFSFASLEKAEDFDPSWVNAQDLCSLKGSEVQGGLGPFGLLTLASENLQEFTPVFFRVFKAPNKHVVLLCSDAKSSSLKSEMYKPSFGGFVDVDLATNKLSLRSLIDHSVVESFGEGGKTNILSRVYPELAITHQAHLYVFNNGTEPITVETLSAWSMKSANIKSS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04040 576 Gene3D Glycosyl hydrolase domain; family 43 56 384 IPR023296 -
Tsu07g04040 576 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 3 574 - -
Tsu07g04040 576 SUPERFAMILY Concanavalin A-like lectins/glucanases 371 571 IPR013320 -
Tsu07g04040 576 Gene3D - 385 568 - -
Tsu07g04040 576 CDD GH32_Fruct1-like 58 360 - -
Tsu07g04040 576 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 3 574 - -
Tsu07g04040 576 Pfam Glycosyl hydrolases family 32 N-terminal domain 52 371 IPR013148 -
Tsu07g04040 576 SUPERFAMILY Arabinanase/levansucrase/invertase 42 372 IPR023296 -
Tsu07g04040 576 SMART glyco_32 52 528 IPR001362 GO:0004553|GO:0005975
Tsu07g04040 576 ProSitePatterns Glycosyl hydrolases family 32 active site. 52 65 IPR018053 GO:0004553|GO:0005975
Tsu07g04040 576 Pfam Glycosyl hydrolases family 32 C terminal 374 567 IPR013189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04040 Tsu-Chr7 46417972 46422485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04040 24 568 Glycoside Hydrolase AT2G36190 64.452 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04040 K01193 - gmx:100799008 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04040 07 46417972 46422485 Tsu07g04040 07 46417972 46422485 ECH