Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04034 ATGGAAGCAGTACTTGCGTCCCGCCATTTCTCGACGCCTCTCTCTCACCATCGAACCaccttctcctcttcttcttcttctatcaAGCTTGcctcttctctttctttcagGAATTCCTTCGCTAAAGAGATATGGGGATTAGTTCAGTCCAAGAGCATAACTGTCAAAACAACGGACACGATTCGTCCAGTTATAGTCAGGGCTGAAATGTTCGGTCAGTTAACCACTGGTCTTGAATCTGCCTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACTAAAGATAATATTGCGGAGCCTATGCGAGAAATAAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTGGTGATCAAGCTGTGGGTGTTGGAGTCGTTAAAGGAGTCAAACCCGATCAGCAATTGGTTAAGATTGTTTATGatgaacttataaaattaaTGGGCGGAGAGGTCTCTGAACTGAATTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAGTTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTACTATTTTGGGCAAACAGGTGAATGTGCCTGTCTATACAGCAGGTACCGATGTCAAACCTTCAGATATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAATATTGACGTGGTTATTGTTGATACTGCTGGTAGGCTGCAGATAGACAAAGCCATGATGGATGAATTAAAAGATGTGAAACGGGTACTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGGATAACTGGTGCCATCTTGACAAAGCTAGACGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTTGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCCGACCGAATGGCAGGACGTATACTAGGAATGGGAGACGTTCTTTCATTTGTGGAGAAGGCACAAGAAGTTATGGAACAAGAAGAAGCTGAAGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTAACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCAAAAATGGGTTCTGTGTCTCGTGTCATTGGGATGATTCCTGGTATGGCTAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGCAGAATATGGAAGTGATAATAGAAGCAATGACCCCAGAGGAAAGGGAAAAGCCAGAACTGTTGGCCGAATCCCCTATTAAGAGGAAAAGAGTTGCTCGGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTCATAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAAACTAATGGGTGCAATGGAAGGTGGATCATTGCCAACACTTAGTAATCTTGAGGAAGCCCTTAAAACAGACGAAACGGCTCCAGCTGGTACCGCAAGGAGGAAAAAGAAATGGTCACAGAGATTTTTTGGGCGCAGATGA 1629 0.426 MEAVLASRHFSTPLSHHRTTFSSSSSSIKLASSLSFRNSFAKEIWGLVQSKSITVKTTDTIRPVIVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIAEPMREIRRALLEADVSLPVVRRFVQSVGDQAVGVGVVKGVKPDQQLVKIVYDELIKLMGGEVSELNFAKSGPTVILLAGLQGVGKTTVCAKLASYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVNVPVYTAGTDVKPSDIAKQGFEEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMEQEEAEDLQKKIMSAKFNFNDFLKQTRTVAKMGSVSRVIGMIPGMAKVTPAQIREAEKNLQNMEVIIEAMTPEEREKPELLAESPIKRKRVARDSGKTEQQVSQLIAQLFQMRVRMKKLMGAMEGGSLPTLSNLEEALKTDETAPAGTARRKKKWSQRFFGRR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04034 542 SMART SRP54_3 169 364 IPR000897 GO:0005525|GO:0006614
Tsu07g04034 542 TIGRFAM ffh: signal recognition particle protein 72 497 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tsu07g04034 542 Gene3D - 73 374 IPR042101 -
Tsu07g04034 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 422 IPR027417 -
Tsu07g04034 542 Pfam SRP54-type protein, helical bundle domain 74 151 IPR013822 GO:0005525|GO:0006614
Tsu07g04034 542 SMART SRP54_N_2 70 155 IPR013822 GO:0005525|GO:0006614
Tsu07g04034 542 CDD SRP_G 170 362 - -
Tsu07g04034 542 PANTHER BNAC02G02820D PROTEIN 46 535 - -
Tsu07g04034 542 Gene3D - 159 353 IPR027417 -
Tsu07g04034 542 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 46 535 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tsu07g04034 542 SUPERFAMILY Signal peptide-binding domain 395 496 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tsu07g04034 542 SMART AAA_5 168 315 IPR003593 -
Tsu07g04034 542 MobiDBLite consensus disorder prediction 519 542 - -
Tsu07g04034 542 Pfam Signal peptide binding domain 395 493 IPR004125 GO:0006614|GO:0008312|GO:0048500
Tsu07g04034 542 Gene3D - 375 499 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tsu07g04034 542 Hamap Signal recognition particle 54 kDa protein [srp54]. 74 514 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tsu07g04034 542 Pfam SRP54-type protein, GTPase domain 169 364 IPR000897 GO:0005525|GO:0006614
Tsu07g04034 542 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 337 350 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04034 Tsu-Chr7 46355311 46361817 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04034 K03106 - gmx:100782581 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04034 07 46355311 46361817 Tsu07g04034 07 46355311 46361817 ECH