Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04030 ATGATGACAGGCAAAAGGAGAAGGAAGACGAGATTagTAAGCGATAAAATCACAGCCAAAAAAAGAACTGCTGCTGCTGTTGAGGTGAAGAGTGGCAACTTGGAGCTGCAATCTTGGGCCAATCTCCCTGTCGAACTCTTAGAATTGATATTATCTCGTTTGGTCGTGGCAGATAATATTCGTGCTTCAGCTGTTTGCAAGAGATGGCATTCAGCCGCCAGTTCTGTACGTGTAGGGGACCAATCACCTTGGCTTATGTATTTCCCAAAAAGTGATAATTGTTATGACTTCTATGACCCTGTGCAGCGTAAGATCCATTCCCTTGAGTTTCCAGAGTTGGATGAATGTCGTGTTTGCTATACAAAAGATGGTTGGTTATTGCTATGTCGGAAGCAGTGGGCCATAAATcaccatttttttctttttaatcccTTTACTAGGGAGCTGATCCAGCTGCCAATACGTGAAGATAGACACTCGATCGCTGGCTTCTCTTGTGCTCCAACTTCAAAAGGTTGTGTTATATTAACTGTTGATTATATTAGTTCTTATGCCGTAGCTATTAGCAGATGTCATCCTGGGTCAAACGAATGGACACATGTTAATTACGAAAACCGCCCAGAATTTTTTGGGAGCATATGGAATAAGCTTGTCTTTTGTAATGGGTTATTTTATTGTCTGAGCCTCACAGGTTGGCTAGGGGTGTTTGATCCACTTAAATGTACTTGGAGTGTTCTGGAAGTACATCCGCCAAAATGCCTAGTAGAGGGTTTTATTGCGAAAAACTGGTCAAAAGAGAAATTTATGACAGAGCACGAAGGGAATATATTTCTAGTTAATGTATGTCGTGGTGATGACCCAATTGTATTCAAGTTAGATCAGACACAAAATGAATGGAAAGTGGTGACAACGCTAGATGGAGTGACACTTTTTGCCAGTTTTACGTCATCTCATTCTAGGACTTACGTCACTGGACTAATGAGAAACAGTGTCTACTTCTCTAAAGTCCGTTTCTATGGAAAGCGTTGCATATCGTTCTCTCTTGATGACCATAGATATTATCCCAATAAGCAGTGCCGTGACTGGATAGAATGGGATGCCTTTGAGAACATCTGGATTGAACCACCGAAAGACTTTGCTGGCtggaactaa 1152 0.4054 MMTGKRRRKTRLVSDKITAKKRTAAAVEVKSGNLELQSWANLPVELLELILSRLVVADNIRASAVCKRWHSAASSVRVGDQSPWLMYFPKSDNCYDFYDPVQRKIHSLEFPELDECRVCYTKDGWLLLCRKQWAINHHFFLFNPFTRELIQLPIREDRHSIAGFSCAPTSKGCVILTVDYISSYAVAISRCHPGSNEWTHVNYENRPEFFGSIWNKLVFCNGLFYCLSLTGWLGVFDPLKCTWSVLEVHPPKCLVEGFIAKNWSKEKFMTEHEGNIFLVNVCRGDDPIVFKLDQTQNEWKVVTTLDGVTLFASFTSSHSRTYVTGLMRNSVYFSKVRFYGKRCISFSLDDHRYYPNKQCRDWIEWDAFENIWIEPPKDFAGWN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04030 383 SMART fbox_2 42 82 IPR001810 GO:0005515
Tsu07g04030 383 Gene3D - 38 78 - -
Tsu07g04030 383 ProSiteProfiles F-box domain profile. 36 87 IPR001810 GO:0005515
Tsu07g04030 383 Pfam F-box-like 39 74 IPR001810 GO:0005515
Tsu07g04030 383 PANTHER OS09G0392200 PROTEIN 12 379 - -
Tsu07g04030 383 SUPERFAMILY Kelch motif 123 339 IPR015915 GO:0005515
Tsu07g04030 383 SUPERFAMILY F-box domain 34 127 IPR036047 GO:0005515
Tsu07g04030 383 PANTHER OS09G0392200 PROTEIN 12 379 IPR044619 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04030 Tsu-Chr7 46336549 46339889 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04030 - - gmx:100796538 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04030 07 46336549 46339889 Tsu07g04030 07 46336549 46339889 ECH