Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04023 ATGACACGTACGCTCGCTCTCTCTCATCGTTTCTCTCTCCTCCGCACCCTCCTCACTTTCATCTCCTCCAACCCCTGTCCCTGCTCCAATGCCATTTTCTCTTGCCCGGAAACCGAACCGATTTTCGGGTTTGCTATTCAATCTTACTGTAAAGCTTCAAAATTTGACGATGCCCTTTTTGCATTTAACTGTATGCGTAAGTTAATCGATGGAAAACCGGGTGTTTCGCTCTGTAATATTTTGATTCATGGGTTTGTTAAATCTGGTAGGTTTGATAGAGCTTTTGAATTTTATAATCAGATGGTTAAGGATAGGATTAAGCCTgatgtttttacttttaatattttgattagtGGTTATTGTAGGAATTTTAAGTTTAGTTTTGCACTGGAGATGTTTGAGGAAATGCACAAAATGGGGTGTCATCCAAATGTTGTTACTTTTAATACTTTGATTAGAGGGTTGTTTAGGGAGCGTAGGATTGATGAAGGGATTGGGATGGTTTATGAAATGATTGAATTGGGGTGTCAACTTTCTGATGTTACTTGTGAGATTTTGGTTGATGGGCTTTGTAAGGAAGGTCGGGTTTTTCAGGCGTGTGATTTGTTGATGGAGTTATCTAAGAGAGGGGTTTTGCCGAAAGGGtatgattattttgttttggtgGAAATTTTGTGTGGGAAAGGAGATGCTTTTAAAGCTTTGGAGGTTATTTATGAGTTATGGAGCAAAGATTGTGTTCCTAGCTTGATTTCTTGTATTGTGATGATTGATGGTTTGAGAGGATtggggaagattgaagaggcAATGAGATTGGTggaaaaaatgcttaaagaggaGGGTATGGTACTTGATGTTGTCACTTTCAATTCTGTGCTTCAAGATGTTTGCGATTCGGGAAGGACAGATGAGGCGAATAGGTTGAGATTACTTGCTTCGAGCAAGGGTTTGGAACCCGATGGCATGACTTATAAAATTCTGGTTAATGGGTATAGAGGAGAGGGAAATCAAACGGAAGGTGAGTTAGTGGTAAATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAGTTGATGGATGGACTATCTAATCGTCAAAGCTCTAGGCGTTATCAAGTGAACAAATTTGGCAGctga 1149 0.3699 MTRTLALSHRFSLLRTLLTFISSNPCPCSNAIFSCPETEPIFGFAIQSYCKASKFDDALFAFNCMRKLIDGKPGVSLCNILIHGFVKSGRFDRAFEFYNQMVKDRIKPDVFTFNILISGYCRNFKFSFALEMFEEMHKMGCHPNVVTFNTLIRGLFRERRIDEGIGMVYEMIELGCQLSDVTCEILVDGLCKEGRVFQACDLLMELSKRGVLPKGYDYFVLVEILCGKGDAFKALEVIYELWSKDCVPSLISCIVMIDGLRGLGKIEEAMRLVEKMLKEEGMVLDVVTFNSVLQDVCDSGRTDEANRLRLLASSKGLEPDGMTYKILVNGYRGEGNQTEGELVVNEMLDRGFIPDLASYNKLMDGLSNRQSSRRYQVNKFGS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Tsu07g04023 382 Gene3D Tetratricopeptide repeat domain 262 379 IPR011990 GO:0005515
Tsu07g04023 382 Gene3D Tetratricopeptide repeat domain 162 261 IPR011990 GO:0005515
Tsu07g04023 382 Gene3D Tetratricopeptide repeat domain 35 161 IPR011990 GO:0005515
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat family 285 331 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat family 108 156 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat 254 279 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat 46 67 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat 78 105 IPR002885 -
Tsu07g04023 382 Pfam PPR repeat 181 211 IPR002885 -
Tsu07g04023 382 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Tsu07g04023 382 PANTHER ATPASE EXPRESSION PROTEIN 3 1 371 - -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 181 213 IPR002885 -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 111 145 IPR002885 -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 323 355 IPR002885 -
Tsu07g04023 382 TIGRFAM PPR: pentatricopeptide repeat domain 146 179 IPR002885 -
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Tsu07g04023 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Tsu07g04023 382 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 1 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04023 80 376 Miscellaneous Gene Families AT4G11690 30.640 4.59e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04023 - - aprc:113860936 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04023 07 46289228 46290376 Tsu07g04023 07 46289228 46290376 ECH