Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03998 ATGTCAATCGGGCGAAGGGGAGATAGACAACATAGAAGTTGGCCTTCGGCGAGTTTTAGTCTGTTGCATGAACCACATGTGTTCAATACAAGAGATGgagatattcaaaagaaaaacgaGGAGGATCTTATATGGGCAGCAATCGAACGTTTACCTACGTTCGATCGCATCAGAAAAGGATTGTTGAATCAAATGCTTGATAATGGAAAGGTTGTGCATTGTCCAATTGATTTTACCAATCTTGGGTGTGATGATAGAAGGTTACTTCTTGAGAGTATGCTAAAATGCGTTGAGGAAGATAATGAGAGATTTCTACGTGGACTCAGAGATAGAGCTAATAGGGTGGGGGTTGAAATTCCAAAAATTGAAGTGCGGTATGAGAATGTATCGGTGGAGGGAGATGTGCATGTTGGTAGTAGATCACTTCCTACCCTACTCAATACTACTCTCAATGCTTTTGAGAATGTTCTGGGATTGTTTCCCTTGGCACcttccaaaaagaaaaatatccgTATTCTTAAAGATATTAGTGGAATTATCAAACCATCAAGgatGACCTTACTTCTGGGTCCTCCAGGTTCAGGGAAAACAACATTGCTTAGGACACTTGCAGAGTCTCTTGATCGGAATTTAAGGGTTAGTGGAAGAATTACTTACTGTGGACATGAACTAAATGAATTTGTTGCTAGAAGAACATGTGCTTATATTGGTGAACATGACCTTCATTATGGAGAAATGACTGTGAGAGAGACATTAGATTTTTCAGGACGTTGTTTAGGTGTTGGAACAAGGTATCAAATGTTAGAGGAACTTTTAAGAAGAGAAATAGGAGCAGGAATTAAGCCAGACCCTGAGATTGATGCATTCATGAAGGCTACATCACTATCAGGCCAAAAAGCCAGTTTATTAACAGATTATGTTCTTAAGTTGCTTGGATTGGATATTTGTGCTGACACCAAGGTTGGTGATGACATGACAAGGGGTATCTCTGGTGGACAAAGGAAGCGAGTCACAACAGGGGAAATGCTAGCTGGACCAGCAAAAACACTTTTCATGGATGAAATATCAACAGGATTAGATAGTTCAACAACTTTTCAAATAACCAAGTTCATGAGACAAATGGTTCACATATTAGATGTAACAATGGTGATTTCCCTTCTACAACCAGCACCGGAGACATTTGAACTCTTTGACGACATTATCCTACTTTCAGAAGGTCAAATTGTATACCAAGGACCGCGTGAAAACGTCTTAGAGTTTTTCGAAACCATCGGTTTCAAATGTCCTCCAAGAAAAGGAGTAGCAGATTTTTTACAAGAAGTGACATCTAAAAAAGACCAACAACAATATTGGTTCAGAAAAGATCAACCTTACAGATATGTTTCAGTTTCTGAATTTGTCGATTCCtttaattcatttcatattgGAAAGGAACTTGTAGAAGAGCTTAAGGTTCCTTATGATAAGAGAAAAACTCATCCAGCTGCATTAGTGAAAGAAAAATATGGAATATCAAATTGGGAATTATTGAAGGCATGTTTTTCAAGAGAATGGTTACTTATGAAACGCGAATCTGTTGTTTTTGTGTTCAGAATGGTTCAGTTAGCAATATTGGCGATTTTCGCATCTACCTTGTTCCTTAGAACTAACATGCCTTTTGGAAGTGTTGAAGATGGACAAAAATACTATGGAGCATTGTTTTTTACTATGTTGAATATGATGTTTAATTGTGCATCGGAACAAGCCACGCTTGTTGACAGACTTCCTGTCTTTTACAAACAAAGGGATTTCATGTTCTTTCCTGCATGGACATTTGGTTTTCCTATGTGGTTTCTTAGGATCCCTTTGTCATTTATTGAACCAACCATTTGGGTTCTACTTACATACTATCCAATTGGTTTTTCTCCATCACCTAGCAGATTTTTTCGACATTATCTTGTATGTGTTAGCATTCACAACATGGCTCTTGGTCTATTTCGACTTGTTGGTTCAGTTGGTAGAACACAAGTTCTTGCAAACATACTGGCTGGTTTGACCTATCAACTTGTATTTGTTCTTGGAGGATTCATCGTCGCTAAAAATGATATTAAGCCATGGATGTTATGGGGCTATTATGTTTCTCCTATGTCGTATGGTCAGAATGCGATCGTAATAAATGAATTTTTAGATGAAAGATGGAGCAAACCAAATACAGACCCTAGATTTAATGCTACTACTGTTGGGGAATTACTTCTTAAAGCTAGAGGATTTTATACACAAGACTATTGGTTTTGGATATGCATTGGAGCCTTGTTTggattttctcttcttttcaaCTCTCTCTTCATTCTCGCAATAACTTATTTGAATCCTATAGATGGTTCAAATGCATTCATCGAGGATGTAGGTGACAAGAAGGACGAAAGTTCTTCAGAAATTAGTTCTTTaaatgaagaacgaaaaacggGAATGGTTTTACCGTTTCAGCCTCTTTCACTTGCATTCAGTCATCTGAACTACTATGTAGATATGCCGGTTGAAATGAAGAGTAAAGGAATCGATGACGATAGACTTCAACTACTACATGATGTTAGTGGTGCTTTCAGACCAGGAATATTGACAGCACTTATGGGTGTTAGTGGTGCTGGAAAGACAACCCTCATGGACGTATTAGCTGGAAGAAAAACAGGCGGATATATTGAAGGAAGTGTTAACATTTCTGGTTATCCAAAAAACCAAACAACATTTGCTCGAGTTAGTGGTTATTGTGAGCAAAACGACATTCATTCCCCCTATGTTACTGTCTATGAATCTTTACTATTTTCCGCGTGGCTTCGCCTTCCTTCAGACATTAACATACAAACAAGAAAGATGTTTGTTGAACAAGTCATGGAATTAATTGAGCTTACACCAATCAAAGATGCACTTGTAGGCTTTCCAAGAGTAAATGGTTTATCAACAGAACAAAGAAAAAGGCTTACTATTGCTGTGGAATTGGTTTCTAACCCTTCCATCATCTTCATGGATGAACCAACATCAGGTCTTGATGCTAGAGCCGCTGCTATCGTGATGCGAACCGTCAGAAACACAGTAGACACAGGGAGAACTGTTGTGTGCACAATTCACCAACCAAgcattgatatttttgaagctTTTGATGAGCTATTGTTGATGAAAAGAGGAGGACAAATTATTTATGCAGGACCTCTTGGTCATCAATCACATAAGCTTATAGAATATTTTGAAGCTATTGCGGGGGTTCCAAAAATCAAGGTCGGATATAATCCTGCCGCATGGATGCTTGAGATCAGTAGTCCTTCAGCTGAGGCCCAACTTGGTGTAGATTTTGCAGAGATTTACGCCAATTCTACACTTTACCGAAGGAATAAAGAGCTTATCGAAGAAATCAGTACTCCTACGCCAGGTTCCACAGACTTATTCTTCCCAACCAAATATTCTCAACCATTTTATGAGCAGTTCAAAGCTTGTTTCTGGAAACAATATTGGTCATATTGGAGAAATCCGCCATATAATTGTGCTCGGTTCATCTTCACAATATCAATCGGATTATTGTTCGGCCTAATCTTTTGGAATAAAGGCCAAAATTTTCATAAACAACAAGATTTATCTAATCTTGTGGGAGCTATGTATGCTGTTGTATTCATCCTCGGAACCATTAACGTTATGGGAGTGCAACCAGTTGTTGACATGGAACGAATTGTCTTATATCGCGAAAGAGCTGCAAGAATGTATTCTGAATTGGCTTATGCTTTCGGTCAGGTGGCAATAGAGATAATTTACAACTTAATTCAAACAGCCATATACACTACTCTTATTTATTCCATGATGGGATTTGCATGGAATGCAGCAAAATTCTTCATTTTGTACTATTTTTTGTCAATGTGTTTAATATTCCTCACCTTGTATGGTATGATGTCAGTTGCTTTAACCCCAAGTTACCAATTTGCTTCCATTTTTGGTCCTGCCTTAATGGCTATATGGAACTTGTTTTCTGGCTTTGTCATTCCTAGGACGCAAATTCCTAAATGGTGGAGATGGTACTATTGGGCTTCTCCCAATGCTTGGGCAGTTTATGGCATAGTTACATCTCAATTAGCTCAAGACCACCTTGTTATTGGAGCTATTCCTGTTCTGCCATTGCAACATGAATCTGAACTAACAAGTACTATTGATCAAATAGAAAAAGCTCAACTTTCACAATAG 4203 0.3733 MSIGRRGDRQHRSWPSASFSLLHEPHVFNTRDGDIQKKNEEDLIWAAIERLPTFDRIRKGLLNQMLDNGKVVHCPIDFTNLGCDDRRLLLESMLKCVEEDNERFLRGLRDRANRVGVEIPKIEVRYENVSVEGDVHVGSRSLPTLLNTTLNAFENVLGLFPLAPSKKKNIRILKDISGIIKPSRMTLLLGPPGSGKTTLLRTLAESLDRNLRVSGRITYCGHELNEFVARRTCAYIGEHDLHYGEMTVRETLDFSGRCLGVGTRYQMLEELLRREIGAGIKPDPEIDAFMKATSLSGQKASLLTDYVLKLLGLDICADTKVGDDMTRGISGGQRKRVTTGEMLAGPAKTLFMDEISTGLDSSTTFQITKFMRQMVHILDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPRENVLEFFETIGFKCPPRKGVADFLQEVTSKKDQQQYWFRKDQPYRYVSVSEFVDSFNSFHIGKELVEELKVPYDKRKTHPAALVKEKYGISNWELLKACFSREWLLMKRESVVFVFRMVQLAILAIFASTLFLRTNMPFGSVEDGQKYYGALFFTMLNMMFNCASEQATLVDRLPVFYKQRDFMFFPAWTFGFPMWFLRIPLSFIEPTIWVLLTYYPIGFSPSPSRFFRHYLVCVSIHNMALGLFRLVGSVGRTQVLANILAGLTYQLVFVLGGFIVAKNDIKPWMLWGYYVSPMSYGQNAIVINEFLDERWSKPNTDPRFNATTVGELLLKARGFYTQDYWFWICIGALFGFSLLFNSLFILAITYLNPIDGSNAFIEDVGDKKDESSSEISSLNEERKTGMVLPFQPLSLAFSHLNYYVDMPVEMKSKGIDDDRLQLLHDVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGSVNISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLFSAWLRLPSDINIQTRKMFVEQVMELIELTPIKDALVGFPRVNGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGPLGHQSHKLIEYFEAIAGVPKIKVGYNPAAWMLEISSPSAEAQLGVDFAEIYANSTLYRRNKELIEEISTPTPGSTDLFFPTKYSQPFYEQFKACFWKQYWSYWRNPPYNCARFIFTISIGLLFGLIFWNKGQNFHKQQDLSNLVGAMYAVVFILGTINVMGVQPVVDMERIVLYRERAARMYSELAYAFGQVAIEIIYNLIQTAIYTTLIYSMMGFAWNAAKFFILYYFLSMCLIFLTLYGMMSVALTPSYQFASIFGPALMAIWNLFSGFVIPRTQIPKWWRWYYWASPNAWAVYGIVTSQLAQDHLVIGAIPVLPLQHESELTSTIDQIEKAQLSQ 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03998 1400 Pfam ABC-2 type transporter 388 441 IPR043926 GO:0140359
Tsu07g03998 1400 Pfam ABC-2 type transporter 1035 1077 IPR043926 GO:0140359
Tsu07g03998 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 429 IPR027417 -
Tsu07g03998 1400 Gene3D - 160 465 IPR027417 -
Tsu07g03998 1400 CDD ABCG_PDR_domain2 823 1061 IPR034003 -
Tsu07g03998 1400 Pfam ABC-transporter N-terminal 99 147 IPR029481 -
Tsu07g03998 1400 Gene3D - 839 1075 IPR027417 -
Tsu07g03998 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 430 IPR003439 GO:0005524
Tsu07g03998 1400 Coils Coil 792 812 - -
Tsu07g03998 1400 Pfam ABC-2 type transporter 1151 1364 IPR013525 GO:0016020|GO:0140359
Tsu07g03998 1400 Pfam ABC-2 type transporter 509 721 IPR013525 GO:0016020|GO:0140359
Tsu07g03998 1400 Pfam Plant PDR ABC transporter associated 726 792 IPR013581 -
Tsu07g03998 1400 Pfam ABC transporter 854 1006 IPR003439 GO:0005524
Tsu07g03998 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 826 1078 IPR003439 GO:0005524
Tsu07g03998 1400 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 27 1371 - -
Tsu07g03998 1400 CDD ABCG_PDR_domain1 161 412 IPR034001 -
Tsu07g03998 1400 Pfam ABC transporter 173 355 IPR003439 GO:0005524
Tsu07g03998 1400 PANTHER ATP-BINDING CASSETTE TRANSPORTER 27 1371 - -
Tsu07g03998 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1064 IPR027417 -
Tsu07g03998 1400 SMART AAA_5 863 1055 IPR003593 -
Tsu07g03998 1400 SMART AAA_5 182 407 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03998 Tsu-Chr7 46042658 46051584 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03998 K08711 - gmx:100790545 2071.97