Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03997 ATGACCCGGGATGATTTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGCCGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGaTCCACATGGATACTCCCTCTGGGATCAAGGACTCAATTCCTGCTTGGATCAAATTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAGCGACCGGACTCAATTAGAATATACGAGGCACACATTGGAATGAGTAGCCCGGAACCAAAAATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTACTATGCTAGCTTTGGGTATCATGTTACTAATTTCTTTGCACCTAGCAGTCGGTTTGGAACTCCAGAAGATCTCAAGTCTCTGATAGACAGAGCCCATGAACTAGGCCTGCTTGTCCTGATGGATATGGTACATAGCCATGCATCAAATAATACATTGGATGGCCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAgTCCTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATATAAATTTGACGGGTTTCGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGACTGCAGGTAGCTTTTACTGGAAATTACAATGAGTATTTTGGTTTTGCAACTGATGTTGAAGCTGTGGTTTACCTGATGCTGGTTAATGATCTCATTCACGGGCTCTTCCCTGAAGCGGTTTCAATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCGACGCAAGATGGTGGGATTGGCTTTAATTACCGCTTGCATATGGCCGTTGCAGACAAGTGGATTGAGCTTCTCAAGAAAAAAGATGAAGAATGGAGAATGGGTGATATAGTTCACACACTAACAAACAGAAGGTGGCTGGAAAATTGTGTGGTTTATGCTGAAAGTCATGACCAAGCCTTGGTTGGTGACAAGACACTTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCTACTCCTCTAATAGATCGTGGTATTGCATTACACAAAATGATTAGGCTTATTACTATGGGCCTTGGTGGTGAAGGATATTTGAATTTTATGGGGAATGAATTCGGCCATCCTGAGTGGATCGATTTTCCAAGGGGTGATCAACATCTTCCTAATGGCACAGTGGTTCCTGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGGGTGATGCAGAATATCTAAGATATCGGGGAATGCAAGAATTTGATCGAGCTATGCAACACCTAGAAGAAAGATATCATTTCATGATTTCCGAGCACCAATATATTTCACGAAAAAATGAAGGTGACAAAGTTATAATCTTCGAGAGGGACAACCTGGTCTTTGTATTCAATTTTCATTGGACCAACAGTTATTCAGATTACAAAGTTGGCTGTTTAAAGCCAGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAATAGGATCAGTCACACTGCTGAGTACTTCACCTCTGAAGGATGGTATGATGACCGGCCTCGATCATTCCTCGTGTATGCACCTTGTAGAACAGCGGTGGTGTATGCCCTTGCAGATGTTGAATCAGAGCCAGTTGAACTGTCGGTTGGAGTTGAATCAGAGCCAATTGAACTGTCAGTTGGAGTTGAATCAGAACCAGTTCAACAGTCAGTTGAAGTTGAACCCTGA 1902 0.4227 MTRDDFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPDSIRIYEAHIGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDMVHSHASNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYNEYFGFATDVEAVVYLMLVNDLIHGLFPEAVSIGEDVSGMPTFCLPTQDGGIGFNYRLHMAVADKWIELLKKKDEEWRMGDIVHTLTNRRWLENCVVYAESHDQALVGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGTVVPGNNNSFDKCRRRFDLGDAEYLRYRGMQEFDRAMQHLEERYHFMISEHQYISRKNEGDKVIIFERDNLVFVFNFHWTNSYSDYKVGCLKPGKYKIVLDSDDALFGGFNRISHTAEYFTSEGWYDDRPRSFLVYAPCRTAVVYALADVESEPVELSVGVESEPIELSVGVESEPVQQSVEVEP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03997 633 Gene3D Glycosidases 72 492 - -
Tsu07g03997 633 SUPERFAMILY Glycosyl hydrolase domain 498 595 - -
Tsu07g03997 633 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2, CHLOROPLASTIC/AMYLOPLASTIC 1 595 - -
Tsu07g03997 633 Gene3D Immunoglobulins 1 71 IPR013783 -
Tsu07g03997 633 SMART aamy 102 462 IPR006047 GO:0005975
Tsu07g03997 633 Pfam Alpha amylase, C-terminal all-beta domain 501 594 IPR006048 GO:0003824|GO:0005975|GO:0043169
Tsu07g03997 633 CDD AmyAc_bac_euk_BE 68 483 - -
Tsu07g03997 633 Pfam Alpha amylase, catalytic domain 112 183 IPR006047 GO:0005975
Tsu07g03997 633 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 1 603 - -
Tsu07g03997 633 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 1 595 IPR037439 GO:0003844|GO:0005978
Tsu07g03997 633 Gene3D - 497 604 IPR013780 -
Tsu07g03997 633 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 1 603 IPR037439 GO:0003844|GO:0005978
Tsu07g03997 633 SUPERFAMILY (Trans)glycosidases 75 493 IPR017853 -
Tsu07g03997 633 PIRSF GlgB 1 604 IPR037439 GO:0003844|GO:0005978
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03997 Tsu-Chr7 46023155 46035532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03997 1 597 Glycoside Hydrolase AT5G03650 85.260 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03997 K00700 - gmx:100785968 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03997 07 46023155 46035532 Tsu07g03997 07 46023155 46035532 ECH