Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03977 ATGGCGGAGCATTTAGCATCGATATTCGGAACTGAGAAAGACAGAGTTAACTGTCCTTTCTACTTTAAGATCGGAGCTTGTAGACATGGTGACCGCTGTTCTCGTCTTCATACTAAACCTACCATTAGTCCCACTCTTGTTCTCTCCAACATGTATCAAAGACCTGACATGAATCTCAACTTCATTAACCCTACCCCTAATCAACCTCAACAACCTCAACCTCCTCAACAACCTCAACCTGAATCTCTTGACCCTGATAAACTCCAAGAACACTTTGATgatttttatgAAGATCTATTTGAGGAGCTAAGCAAATATGGTCAAATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCATATGgTTGGCAATGTATATGTTCAATATAAAGAGGAAGACCATGCTGCTAATGCTCTAATGAATCTCACTGGAAGattttattcagGTCGACCGATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGCGAAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGCGGAAGCAGAAGCCGGAGCCCTCCAAGGAATCGTAACTATGAGGGGCGTTCATATTCTGGTCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCCACCATGGTAGGAGGCCAAGAAGCCGTAGTCCTCGTCATAGAGGAAAGCGCAGTAGAAGTCCAGCGGGCAGGGATAGGAGTCCGAATCCGGTCAGAGAAAGAGAAACCAGTGTAGAAAGGAGAGCAAGAATAGAACAATGGAACAGGGAGAAAGAAGTTGAAGATACTGGTAACAGGGACACTAAGAGTAACAATGATTATGAAGAGCCGAGCTTAAAAAATGGCAATGAGTCAGGTAATCATCAGATATAG 981 0.423 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQQPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGHHGRRPRSRSPRHRGKRSRSPAGRDRSPNPVRERETSVERRARIEQWNREKEVEDTGNRDTKSNNDYEEPSLKNGNESGNHQI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03977 326 Gene3D - 43 159 IPR012677 -
Tsu07g03977 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Tsu07g03977 326 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 314 - -
Tsu07g03977 326 MobiDBLite consensus disorder prediction 311 326 - -
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 89 104 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 117 139 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 144 168 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 PRINTS U2 auxiliary factor small subunit signature 179 191 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Tsu07g03977 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Tsu07g03977 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 187 IPR000571 GO:0046872
Tsu07g03977 326 CDD RRM_U2AF35B 44 159 - -
Tsu07g03977 326 MobiDBLite consensus disorder prediction 67 81 - -
Tsu07g03977 326 MobiDBLite consensus disorder prediction 264 310 - -
Tsu07g03977 326 MobiDBLite consensus disorder prediction 241 263 - -
Tsu07g03977 326 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Tsu07g03977 326 SMART c3hfinal6 162 188 IPR000571 GO:0046872
Tsu07g03977 326 MobiDBLite consensus disorder prediction 204 326 - -
Tsu07g03977 326 MobiDBLite consensus disorder prediction 58 87 - -
Tsu07g03977 326 SMART rrm2_1 81 156 IPR003954 GO:0003676
Tsu07g03977 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 153 IPR000504 GO:0003723
Tsu07g03977 326 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Tsu07g03977 326 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 314 IPR009145 GO:0000398|GO:0003723|GO:0089701
Tsu07g03977 326 SUPERFAMILY RNA-binding domain, RBD 91 163 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03977 Tsu-Chr7 45830043 45832903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03977 K12836 - gmx:100783847 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03977 07 45830043 45832903 Tsu07g03977 07 45830043 45832903 ECH