Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03908 ATGAATTTTCCCTTCGACGAGTGGCCCTACAACGACCCTACTATTCCCCCCGAATTGCTCAACTTCAACGAGAGCGAAATTCCAACCAGAGAAGATCTAATGGCAGCCGGAGCAGATCCTCGATTCATCAATTTAGTATTTGATGGACACTCCGGCAATGAAGAAGATAgcgacgaagaagaagaagaagaggaagaggaagaagaagaggatgaagaagatgaagatgaagacgaTGAAGAGTATGTTCCCAATTTACCGCCGTCGTCTAGGGTTTCTAACGAACCTCCTCGGAATCCTACATCCGACGAAGTAATTGTTATTCCCGACGATGAACGGCACAATCCGGTTGaagatgagagaaataaacgCCGCAGAACCGAAGCAGGAGAAGCTTCTTGTTCTTCGATTCCAATCGAAAGCACCGATTGTAGTCAAGAGAATGAATACCGTACCGACATTGACGGCCTCATTTGCCCAATTTGTATGGATGCTTGGACCGATAACGGCGACCATCACGTCTGTTGTCTTCCTTGTGGACATATTTATGGCATGTCTTGTATCAAAAAATGGATTCAACAACGAAAAAATTCGGGGAAGtgTCCGCAATGTAATATGAGATGTTCAATGAAGGATGTGAGGAAACTCTATGCTTCTCGAATAGTTGCTGTTGATGAAGAATCTCAGAAGAGAATTCGGTCACTTGAGAGCAAATGTGCATCTCTTGAGAGTAAGGATGGTAGTTGGCGCAAGAAAGAAATGGGATGGAAGAAGAAAGAAGCTGCACTGCATCTCGATGTTCAGAAACTTACGAAGAGAAACTCTTATTTGAAGAAGCTGGTACAAGATATGCAGAGTAGACAATCTGAATTAATGGTTGCCGGTGGGAACTCTCAACGGAGATATGAATCCGAGTGCAACTATAGCCCAATGTCCCATGGAAAAGGATCTTTTTGCAATTTTGAATATGAGAAAACATTTCACCTAGAAGGTGCTCGTGTGTTTGATATGGACACttctaatcaaattttattaatcgCACGAAAGGAAAAAGCAATGGGTGATGTGCACTTGCTAACTAAACTGAGCTTGATATCTCCATTTGAGATGCAAGATATTGTACTACCATCATCTGCAAATGGTATTAGAGACCTGCATATTTCTCCTTTTGATAGTAGACAGGCCCTCTATGCTTCATTTGGGAAGACATTATCAGTCCTCAGCCTCGACAGCGGCACCCCTGTTCTCAATTATGATCTTCAGGTTCCCGCTTGGTCCTGTACATGGGATCACGTCAATACACATAACATATATGCTGGACTGCAGAATGGTTCTGTCCTGGTGTTTGACATGAGACAAACTGCAGGACCCTTAAAATCTTTAGCTGGGTTGACTAGCAACCCTGTTCATAGTTTGCAGTCTCTTGCACAAACAACAAGTCTCCCTTCTGGTGCCAGAACCATCCTGTCCGCATCTGCTATCGGTCCTTGTCAGTGGGACATTGATTCTGAAGAACGGCCGTTTATGGTTCCTGGGACCGATAATCAAGGTGTTTGTATATCCCTTGCCTATTGTCCGAGCAGCGACGACGTTGTTGTTTCATACCGTCCAAAGTTCAACAATCCGATGGATGTGCCTCTTTCTCCACCGTTGCCCACTCCTTCTCATGTTACTGGTCAAGGAGTACAGGGCTCTAATGTATTGTTAAAGAGAATGGGCGGTAATAATTTCCAAAAGATGAGTTCCTCGTATGCCAATGTAAGTAAAATCCGACTACCAAAATGTGTAATTATAGACATAGAGAATCAGAATAGAATGTTTGCATCTGGAGATGAAGTTACATGTGACTTGGTCTTGCAAGAGTTGCCATCTTTTAGGGTTATTCAGCGATTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTACTCACCTAGTCATGGAATGCTAGGCTGCTTAAGTGAGAATGTATTGCaacttttccgtaccaatctctCGTGA 1998 0.4094 MNFPFDEWPYNDPTIPPELLNFNESEIPTREDLMAAGADPRFINLVFDGHSGNEEDSDEEEEEEEEEEEEDEEDEDEDDEEYVPNLPPSSRVSNEPPRNPTSDEVIVIPDDERHNPVEDERNKRRRTEAGEASCSSIPIESTDCSQENEYRTDIDGLICPICMDAWTDNGDHHVCCLPCGHIYGMSCIKKWIQQRKNSGKCPQCNMRCSMKDVRKLYASRIVAVDEESQKRIRSLESKCASLESKDGSWRKKEMGWKKKEAALHLDVQKLTKRNSYLKKLVQDMQSRQSELMVAGGNSQRRYESECNYSPMSHGKGSFCNFEYEKTFHLEGARVFDMDTSNQILLIARKEKAMGDVHLLTKLSLISPFEMQDIVLPSSANGIRDLHISPFDSRQALYASFGKTLSVLSLDSGTPVLNYDLQVPAWSCTWDHVNTHNIYAGLQNGSVLVFDMRQTAGPLKSLAGLTSNPVHSLQSLAQTTSLPSGARTILSASAIGPCQWDIDSEERPFMVPGTDNQGVCISLAYCPSSDDVVVSYRPKFNNPMDVPLSPPLPTPSHVTGQGVQGSNVLLKRMGGNNFQKMSSSYANVSKIRLPKCVIIDIENQNRMFASGDEVTCDLVLQELPSFRVIQRFKMPAQARDIRYSPSHGMLGCLSENVLQLFRTNLS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03908 665 PANTHER RFWD3 PROTEIN 54 661 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Tsu07g03908 665 MobiDBLite consensus disorder prediction 44 137 - -
Tsu07g03908 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 320 IPR013083 -
Tsu07g03908 665 Coils Coil 50 79 - -
Tsu07g03908 665 CDD mRING-C3HGC3_RFWD3 155 205 - -
Tsu07g03908 665 Gene3D - 325 540 IPR015943 GO:0005515
Tsu07g03908 665 SUPERFAMILY RING/U-box 153 211 - -
Tsu07g03908 665 MobiDBLite consensus disorder prediction 105 130 - -
Tsu07g03908 665 SUPERFAMILY WD40 repeat-like 375 660 IPR036322 GO:0005515
Tsu07g03908 665 Pfam Ring finger domain 159 205 IPR001841 -
Tsu07g03908 665 MobiDBLite consensus disorder prediction 53 83 - -
Tsu07g03908 665 Coils Coil 225 245 - -
Tsu07g03908 665 ProSiteProfiles Zinc finger RING-type profile. 159 205 IPR001841 -
Tsu07g03908 665 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 54 661 - -
Tsu07g03908 665 SMART ring_2 159 204 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03908 K15691 - gmx:100818898 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03908 07 45232787 45238591 Tsu07g03908 07 45232787 45238591 ECH