Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03866 ATGATGAATACGGCGAACGGTAATATGACGACgccgtcttcttcttcttccggtggtggtggtggtggtgctaCACAGTCACAAGGTCTCAAAACCTATTTCAAAACCCCTGAAGGAAAATATAAACTTCAATTCGAGAAAACTCATCCTTCTGGTCTTCTTCAATTCAATCATGGCAAAACCGTTTCTCTGGTAACCCTAGCACATCTTAAGGAGAAGGCAGCGCCTTCAACTCCGACTGCTTCGTCTTCGAGTTTTAGTGCCAGCAGTGGAGTACGGTCAGCTGCGGCTAGATTGTTAGGAGGAGGAAGCAATGGAAGTAGGGCACTTAGTTTTGTTGGTGGAAATGGTAGTAGTAAAAGCAATGGAGGAACTGGTAGGATTGGTTCCATTGGTGCTTCGAGTTTgagtagtgcggtggctaatccaAATTTTGACGGGAAAGGATCTTACTTGATTTTCAATGCCGGGGATGCGATTTTGATAAGTGATTTGAATTCTCAAGACAAGGACCCGATAAAGTCTATCCACTTCAGTAATTCGAATCCTGTCTGCCATGCATTTGATCAAGATGCTAAGGACGGGCATGATTTGCTCATAGGCTTGTTCTCTGGCGATGTCTATTCGGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGATTGTCGGAGCTCACCATTACAACAAAGATGGTATTCTCAATAACAGTCGTTGTACATGTATTTCTTGGGTGCCCGGAGGTGATGGTGCTTTTGTTGTTGCGCATGCTGATGGGAATTTGTACGTATATGAAAAGAATAAAGATGGTGCTGGTGATTCTTCATTCCCAATCCTCAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGGTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATCAACAGTATTTCTTTCTCAGCGGATGGGACATACTTGGCAACCGTTGGACGAGATGGTTACTTGCGAGTGTTTGATTATGCAAAAGAACAACTTATATGCGGCGGGAAAAGCTATTATGGTGGTTTATTATGTTGTGCTTGGAGTATGGATGGAAAGTATATTTTGACGGGAGGAGAAGATGATCTAGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTTGCATGGGGCGAGGGACATAACTCATGGGTCAGTGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACAATTATGTATCGATTCGGTTCAGTTGGTCAGGATACCCAATTGCTTCTATGGGATCTGGAAATGGACGAGATTGTGGTGCCCTTGAGGCGTCCCCCCGGTGGATCCCCAACTTTTGGTTCCCCAACTTTTAGTACTGGAAGTCAGTCGTCCCATTGGGACAATGTAGTACCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCGCTGGTTGCTCATCGTGTGCATACCGAGCCACTTTCTAGCGTGATATTTACCCAGGAATCTGTACTTACAGCCTGCCGTGAGGGGCACATCAAAATCTGGACGAGACCTGGCATAGCCGAGAGCCAGCCAAGCAACTCTGAAACCTTGTTAGCTACCAGTCTCAAGGAGAAGCCTCCACTTTCTAGCAAGATCAGCAACTCTAGCTACAAACAATAA 1680 0.4286 MMNTANGNMTTPSSSSSGGGGGGATQSQGLKTYFKTPEGKYKLQFEKTHPSGLLQFNHGKTVSLVTLAHLKEKAAPSTPTASSSSFSASSGVRSAAARLLGGGSNGSRALSFVGGNGSSKSNGGTGRIGSIGASSLSSAVANPNFDGKGSYLIFNAGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPILKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSADGTYLATVGRDGYLRVFDYAKEQLICGGKSYYGGLLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTFGSPTFSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSSVIFTQESVLTACREGHIKIWTRPGIAESQPSNSETLLATSLKEKPPLSSKISNSSYKQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03866 559 Pfam WD domain, G-beta repeat 306 334 IPR001680 GO:0005515
Tsu07g03866 559 Pfam WD domain, G-beta repeat 351 376 IPR001680 GO:0005515
Tsu07g03866 559 Gene3D - 21 529 IPR015943 GO:0005515
Tsu07g03866 559 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 334 IPR001680 GO:0005515
Tsu07g03866 559 SUPERFAMILY WD40 repeat-like 143 523 IPR036322 GO:0005515
Tsu07g03866 559 SMART WD40_4 379 431 IPR001680 GO:0005515
Tsu07g03866 559 SMART WD40_4 337 376 IPR001680 GO:0005515
Tsu07g03866 559 SMART WD40_4 485 522 IPR001680 GO:0005515
Tsu07g03866 559 SMART WD40_4 295 334 IPR001680 GO:0005515
Tsu07g03866 559 SMART WD40_4 228 266 IPR001680 GO:0005515
Tsu07g03866 559 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 385 IPR001680 GO:0005515
Tsu07g03866 559 MobiDBLite consensus disorder prediction 527 559 - -
Tsu07g03866 559 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 2 556 - -
Tsu07g03866 559 PANTHER WD REPEAT PROTEIN 2 556 - -
Tsu07g03866 559 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03866 311 438 Miscellaneous Gene Families AT5G08390 23.438 9.45e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03866 K24741 - gmx:100782580 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03866 07 44786210 44792227 Tsu07g03866 07 44786210 44792227 ECH