Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03838 ATGAGAAATTTTGTTATCCTCGGTTCTTCCATCATACCATCTTCACCATCTTCTTCCACTCCACAACACCGTCACACTCACACAATCAAACCCCACAAAACCTCTCTTCAAAAGTTCCATCCTTTATCTCCCAAGAACAATTCCACTACTCTTATTCAAACTCCTCTTATTCTCAAAGAATTTGAAACTGTTCTACATGGAACGCTTGATTCTGATGTGGTTGCTGAACTCTTAGCTAATGCGGTTCTGATGGGTATTAAAGACAGAAATGTTAGGATTGTTATTGATACTTTGAATAAAGTGGAGAAGGGTCTTGGTGAAATTTCTCTTTCTACTCATCTTGATGCTTCTGCTATTGCAAATGAGTGTTGTTATATGGTTTCATGTGGTCACATTGAAGAAGCTGTTGAATTGATGGAGGTTCTCTCAcGTTTCCAGTTATCAATTGCACAACTTGTTCAGCCATCTGACATTATAAAAAGATGTGTTCTTAGTCGTAAACCAACTTTAGCTGTGAGGTATGCGACCCTTCTTCCACAAGCGCACATATTATTTTGCAACATCATATCTCGATTTGGCAAAAGTAGAGATTTGGCTTCTGCTCTGAGAGCTTATGATGCAATGAAGAAGAAATTGGAAAGACCTAATATGTACATATACCGGGCAATAATTGACACCTGTGGTCTCTGTGGCGATTTCAAGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAACGCCCGTGATCTCAACTACTCGTTAAATCTATATCAGAATATGCAGAAGCTAGGCCTGAAACCAGATATGACATCCTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGACCTGGCCCAAGACATGTATAAGGATCTCAAGCATTTGGAATCAATGGGACAGCTTAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTTTAAGAATCAAGCATGACATGCAGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCATTAATCAGTGCATGTGCGCATGCAGGGCTTGTAGAGCAGACAATTCAGTTATTTGAAGAAATGCTTTCGGCTGGCTGTGAACCTAATACACAGTGTTTCAACATCATTTTACATGCATGTGTTGAAGGCTGCCAATATGACAGGGCTTTTCGGTTTTTCAATTCTTGGAAGGGAAATAAGATGCTAGTGTCCTCTGGTGAAAACTACAATAGTAATTCAGAGCAGCGAGATACGGATAATGTTACCACAGTGCCAAAACGCATTTCTAGTTCACATATCTTAGGTTTTATCGAGAGGTTCCCTTTCCAACCAACTACATCAACATACAATATTTTACTGAAGGCCTGTGGTGCTAATTACTATCATGCAAAAGCGTTAATCAATGAGATGAGAACTATAGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGGTATATGTGGAGGATCAGAAAATGTGGAGGGTGCCATTGAGATTTTGAGAACCATGGTTGATGCTGGAATTAAACCTGATGTTGTTGCATATACAACAGCCATTAAGGTTTGTGTCGAAAGTAAGAATTTTTCACAAGCATTAAAATTATATGAAGAAATGAAAAGCTATGAGACACATCCAAATTTGGTGACATATAATACACTTCTAAGGGCACGCAATAAATACGGATCCTTACGTGAAGTGCAACAGTGTTTGGCTGTATATCAGGATATGCGAAAGGCTGGGTTCAAAGCCAATGACTACTATCTGGAGGAGCTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGACAACGAAGATTACGAAGTAGAATTTTCTACCAGCAAGACATCTGAAATAGAGAGACCTCAGAGTATACTTCTTGAAAAAATTGCGGCACATCTATTAATGAGAGTAGCTGACATCTTGGCAATTGATGTTCAAGGACTCACAAAGGTGCAAATAAATTCCTCAgctattattttcaataaaccTGTCTCAAGCATGGCTCAAAGCTaa 2091 0.3831 MRNFVILGSSIIPSSPSSSTPQHRHTHTIKPHKTSLQKFHPLSPKNNSTTLIQTPLILKEFETVLHGTLDSDVVAELLANAVLMGIKDRNVRIVIDTLNKVEKGLGEISLSTHLDASAIANECCYMVSCGHIEEAVELMEVLSRFQLSIAQLVQPSDIIKRCVLSRKPTLAVRYATLLPQAHILFCNIISRFGKSRDLASALRAYDAMKKKLERPNMYIYRAIIDTCGLCGDFKKSRYIYEDLLNQKITPNIYVFNSLMNVNARDLNYSLNLYQNMQKLGLKPDMTSYNILLKACCVAGRVDLAQDMYKDLKHLESMGQLKLDVFTYSTIIKVFADAKLWQMALRIKHDMQSAGVSLNTVAWSSLISACAHAGLVEQTIQLFEEMLSAGCEPNTQCFNIILHACVEGCQYDRAFRFFNSWKGNKMLVSSGENYNSNSEQRDTDNVTTVPKRISSSHILGFIERFPFQPTTSTYNILLKACGANYYHAKALINEMRTIGLSPNQISWSILIGICGGSENVEGAIEILRTMVDAGIKPDVVAYTTAIKVCVESKNFSQALKLYEEMKSYETHPNLVTYNTLLRARNKYGSLREVQQCLAVYQDMRKAGFKANDYYLEELIEEWCEGVIQDNEDYEVEFSTSKTSEIERPQSILLEKIAAHLLMRVADILAIDVQGLTKVQINSSAIIFNKPVSSMAQS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 287 312 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 360 394 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 504 538 IPR002885 -
Tsu07g03838 696 TIGRFAM PPR: pentatricopeptide repeat domain 539 572 IPR002885 -
Tsu07g03838 696 MobiDBLite consensus disorder prediction 9 24 - -
Tsu07g03838 696 Pfam PPR repeat family 358 404 IPR002885 -
Tsu07g03838 696 Pfam Pentacotripeptide-repeat region of PRORP 193 309 IPR033443 -
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 314 IPR002885 -
Tsu07g03838 696 Pfam Pentatricopeptide repeat domain 525 582 IPR002885 -
Tsu07g03838 696 Pfam Pentatricopeptide repeat domain 467 515 IPR002885 -
Tsu07g03838 696 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 67 678 - -
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 609 IPR002885 -
Tsu07g03838 696 MobiDBLite consensus disorder prediction 9 40 - -
Tsu07g03838 696 PANTHER OS03G0284900 PROTEIN 67 678 - -
Tsu07g03838 696 Gene3D Tetratricopeptide repeat domain 456 650 IPR011990 GO:0005515
Tsu07g03838 696 Gene3D Tetratricopeptide repeat domain 314 453 IPR011990 GO:0005515
Tsu07g03838 696 Gene3D Tetratricopeptide repeat domain 183 313 IPR011990 GO:0005515
Tsu07g03838 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Tsu07g03838 696 Pfam PPR repeat 325 355 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03838 Tsu-Chr7 44575939 44582974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03838 196 630 Glycosyltransferase AT1G05670 22.588 1.61e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03838 - - gmx:100794606 1005.36