Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03830 ATGGATTCTCACGGCCCTTTCTCCGAACCCAACACCCCACACACCCCAAGACCTACCCTATTCCTCTCCACTTCCGGCAAAGCCCTTCTTGTCTCTAACTCCAACAAATCCCTCGTCATTTCTAATTCAGGCAAACGCCTTGACAACACTAATTCAGGCAAACGCCTTGATAACACCAATAGCaagaaaaaatatgtcaaaCAGGTTACCGGCAGACATAATGATACCGAGCTTCATCTCGCTGCGCAACGCGGTGATGCTGCTGCGGTTAGACAGATTCTGGCTGAGATTGATGATCAAATGATGGGAACGTTAAGTGGTGCTGAGTTTGATGCTGAGGTTGCTGAAATTAGGTCTGCTATTGTTAATGAGGTTAATGACTTAGGTGAAACTGCTTTGTATACCGCTGCTGATAAAGGACAGTTTGATGTTGTTAAAGAGCTTCTTCCTTATACAACCAAAGAAGCACTTTCTTTTAAAAACCGTTCTGGTTTTGATCCTTTGCATATTGCAGCAAACCAAGGTCACAAAGATATTGTGCAGTTGCTGCTAGACCATGATCCAGAGCTAATCAAGACATTTGCTCAGTCAAATGCAACACCTCTTGTATCTGCAGCTACAAGAGGGCATGCGGATGTTGTTGAACTCTTACTATCATGTGATCCCAGTCAGTTGGAGATACCTAGATCCAATGGAAAGAATGCACTCCATTTAGCTGCACGTCAAGGTTATGTTGATGTTGTCAAGATTTTGCTAGGGAAGGACCCGCAGCTTGCTCGGAGGACTGATAAGAAAGGACAAACTTCGCTTCATATGGCTGTCAAAGGGGTTAACTGTGAAGTGGTGAAGTTGCTTCTTGCTGCTGATGCTGCAAGTGTCATGCTTCCTGATAAGTTTGGAAACACTGCTTTGCATGTAGCCACCAGGAAGAAGAGGGTAGAGATAGTGAATGAGTTATTGCTTCAACCTGACACCAATGTGAATGCCCTCACAAGAGACCGCAAAACAGCTCTTGACCTTGCGGAAGCACTTCCAATATCGGAAGAAATTTTGGAGATTAAGGACTCCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAGCCAAGGGACGAGCTAAAGAAAACAATGACACAGATTAAGAAAGATGTATCTTTTCAGCTTGAACAAACTCGAAAAACAAACAAGAATGTGAATGGGATTGCCAAGGAGCTACGCAAGTTGCACAGAGCAGGAATCAACAATGCTACCAACTCTGTAACTGTGGTTTCAGTACTATTTGCAACAGTGGCATTTGCTGCGCTTTTCACGGTCCCCGGTGGGGATGATAATCAAGGGAAGGCTGTGATGGTGCACACAACATCTTTCAAGACCTTCTTTATCTCTAATGCTATTGCCCTTTTCACTTCTTTGGCTGTGGTGGTAGTTCAAATAACAGTTGTCAGAGGGGAGATAAAGTCCGAGAGGAAGGTTGTGGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGTACCTCAATTTCATTCGTTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCCAGTGGGCTGCAATCCTTATTACGGTTTTTGGGGCGATTATAATGGGTGGTGTTCTTGGTACAATGACATACTACGTTGTTAAATCAAAACGTCTCCGAAGAGTGAGGAAAAAAGAGAAGATATCAAGGAATGGAACATATTCGATGCGTAATTCTGATTCTGAATCAGAAGTAAATCCAATTTATGCTATTTAA 1767 0.4324 MDSHGPFSEPNTPHTPRPTLFLSTSGKALLVSNSNKSLVISNSGKRLDNTNSGKRLDNTNSKKKYVKQVTGRHNDTELHLAAQRGDAAAVRQILAEIDDQMMGTLSGAEFDAEVAEIRSAIVNEVNDLGETALYTAADKGQFDVVKELLPYTTKEALSFKNRSGFDPLHIAANQGHKDIVQLLLDHDPELIKTFAQSNATPLVSAATRGHADVVELLLSCDPSQLEIPRSNGKNALHLAARQGYVDVVKILLGKDPQLARRTDKKGQTSLHMAVKGVNCEVVKLLLAADAASVMLPDKFGNTALHVATRKKRVEIVNELLLQPDTNVNALTRDRKTALDLAEALPISEEILEIKDSLIRYGAVKANDLNQPRDELKKTMTQIKKDVSFQLEQTRKTNKNVNGIAKELRKLHRAGINNATNSVTVVSVLFATVAFAALFTVPGGDDNQGKAVMVHTTSFKTFFISNAIALFTSLAVVVVQITVVRGEIKSERKVVEVINKMMWLASVCTSISFVAASYIVVGRRSQWAAILITVFGAIIMGGVLGTMTYYVVKSKRLRRVRKKEKISRNGTYSMRNSDSESEVNPIYAI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03830 588 MobiDBLite consensus disorder prediction 567 588 - -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat profile. 163 190 IPR002110 GO:0005515
Tsu07g03830 588 SUPERFAMILY Ankyrin repeat 78 358 IPR036770 -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat region circular profile. 163 190 - -
Tsu07g03830 588 Gene3D - 45 187 IPR036770 -
Tsu07g03830 588 Pfam Domain of unknown function 415 519 IPR026961 -
Tsu07g03830 588 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 38 581 - -
Tsu07g03830 588 Gene3D - 188 348 IPR036770 -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat region circular profile. 299 329 - -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat profile. 265 290 IPR002110 GO:0005515
Tsu07g03830 588 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat region circular profile. 265 290 - -
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat profile. 299 332 IPR002110 GO:0005515
Tsu07g03830 588 PANTHER CASKIN 38 581 - -
Tsu07g03830 588 Pfam Ankyrin repeats (3 copies) 263 328 IPR002110 GO:0005515
Tsu07g03830 588 Pfam Ankyrin repeats (3 copies) 197 255 IPR002110 GO:0005515
Tsu07g03830 588 Pfam Ankyrin repeats (3 copies) 78 187 IPR002110 GO:0005515
Tsu07g03830 588 ProSiteProfiles Ankyrin repeat region circular profile. 231 252 - -
Tsu07g03830 588 SMART ANK_2a 299 329 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 73 102 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 197 226 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 265 295 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 163 192 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 231 260 IPR002110 GO:0005515
Tsu07g03830 588 SMART ANK_2a 128 156 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03830 Tsu-Chr7 44523533 44527128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03830 12 588 Miscellaneous Gene Families AT3G09550 73.711 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03830 - - gmx:100801840 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03830 07 44523533 44527128 Tsu07g03830 07 44523533 44527128 ECH