Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03808 ATGGCTATAACCGCCACCATTTCAGTTCCTATTACATCACCAACTCGTCGCACACTTTCCTCCGTCAATTCCTTTCTCCCTTCTTCTTCCCGATCCATTTCCGCCACACCACAACGCACTTTCAAATACCCTAATTCCCGCCTCGTTGCTTCATCCATGAAAACTGAAACTCCCGTTAAATCAACAACCTCCACTTCATTCCTTCACCAAAAGGAATCTGGCTTTCTCCATTTCGCTAAATTTCACGGTCTTGGAAACGACTTCGTTTTGATTGATAACAGAGACTCTTCCGAACCAAAGATTAGTTCAGAGAAAGCTGTGCAAATTTGTGATCGTAACTTTGGTGTTGGTGCTGATGGTGTTATCTTTGTTTTGCCTGGTATTAATGGTACTGATTATACAATGAGGATTTTCAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTCCGATGTTTTGCCAAATTTGTTTCTCAGCTTGAGAGTTTACATGGGAGACACAGTTTCACCATACACACTGGTGCTGGTCGGATTGTTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCGATTCTTAAAGCATCAGATGTGCCTACTAAATTATCTCCAAATAAGGATCAAGCTGTTGTTAAAGCAGAGATAGATGTTGATGGAATTATCTGGAATGTTACTTGTGTTAGCATGGGAAATCCACACTGTTTAGTCTTCAGTAACAAAGAAACTCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGATGTTCCCTGCACGAACAAACACAGAGTTTGTGCAAGTTCTTTCTGATTCTCACCTGAAGATGCGTGTTTGGGAGCGTGGTGCAGGAGCAACTCTTGCCTGCGGAACCGGAGCATGTGCTACAGTTGTTGCAGCCGTTCTTGAGGGTCGTGCTGGGCGGAACTGCACAGTTGATCTACCTGGAGGGCCTCTTCAGATTGAATGGAAGGATGAAGATAATCATGTCTATATGACAGGTTCTGCAGAACTAGTGTATTATGGCTCTTTGCCCCTTTGA 1083 0.434 MAITATISVPITSPTRRTLSSVNSFLPSSSRSISATPQRTFKYPNSRLVASSMKTETPVKSTTSTSFLHQKESGFLHFAKFHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLHGRHSFTIHTGAGRIVPEVLEDGNVRVDMGEPILKASDVPTKLSPNKDQAVVKAEIDVDGIIWNVTCVSMGNPHCLVFSNKETQNLLVDELKLAEIGPKFEHHEMFPARTNTEFVQVLSDSHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWKDEDNHVYMTGSAELVYYGSLPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03808 360 ProSitePatterns Diaminopimelate epimerase signature. 139 153 IPR018510 GO:0005737|GO:0008837|GO:0009089
Tsu07g03808 360 SUPERFAMILY Diaminopimelate epimerase-like 219 358 - -
Tsu07g03808 360 Pfam Diaminopimelate epimerase 78 198 IPR001653 GO:0008837|GO:0009089
Tsu07g03808 360 Pfam Diaminopimelate epimerase 232 353 IPR001653 GO:0008837|GO:0009089
Tsu07g03808 360 Hamap Diaminopimelate epimerase [dapF]. 76 360 IPR001653 GO:0008837|GO:0009089
Tsu07g03808 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 211 344 - -
Tsu07g03808 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 359 IPR001653 GO:0008837|GO:0009089
Tsu07g03808 360 SUPERFAMILY Diaminopimelate epimerase-like 76 205 - -
Tsu07g03808 360 TIGRFAM DapF: diaminopimelate epimerase 77 358 IPR001653 GO:0008837|GO:0009089
Tsu07g03808 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 49 207 - -
Tsu07g03808 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 359 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03808 K01778 - gmx:100807528 622.468