Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03781 atGGGTCAAGGAACACCAGGCGGCGGTTTGAACCGGCAAGGTTCACCAGGCGATCGAAAACCAGACGACAAAAAAGACAAGAAATTCGAACCAGCAGCACCACCAGCACGCGTAGGTCGTAAACAGCGAAAACAAAAAGGTTCAGAGGCGGCGTCACGGTTACCGACGGTAACTCCGTTATCGAAGTGTAAACTGAGGTTATTGAAACTTGAACGAATCAAAGATTATTTGTTAATGGAAGAAGAGTTTGTAGCGAATCAGGAACGGCTTAAACCTCAGGAAGAAAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGCTCTCCTATGAGTGTTGGTAATCTTGAAGAATTGATTGATGAGAATCATGCTATTGTTTCGAGTTCTGTTGGTCCTGAATATTATGTTGggatttcttcttttgttgATAAGGATCAATTGGAACCTGGTTGCGCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGACGTTGATCCGATGGTCTCTGTCATGAAGGTCGAGAAGGCTCCTTTAGAATCATATGCTGACATTGGTGGTTTAGATGCCCAAATACAGGAAATCAAAGAAGCAGTCGAGCTTCCCCTGACACATCCGGAACTTTACGAAGATATTGGTATCAAGCCTCCAAAGGGAGTCATTTTATATGGAGAACCTGGAACCGGGAAGACATTGCTTGCAAAGGCTGTGGCCAACTCAACATCAGCAACATTCTTACGCGTTGTCGGTAGTGAATTGATACAAAAATACTTGGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCCGAGTTGCCGATGATCTTTCTCCTACTATTGTCTTCATTGATGAAATTGATGCTGTTGGAACAAAAAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACAATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTAAAAGTTATTCTTGCAACCAACAAAATTGAAAGCCTCGATCCAGCTTTGCTGCGACCTGGTCGAATAGACAGGAAGATTGAATTTCCTCTCCCTGATATCAAAACAAGGAGACATATTTTCAAGATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACCGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACACATCCTGACTTTAAGAAAGCAAAAGATAAAGTTATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGATTGTATATGTGA 1338 0.4118 MGQGTPGGGLNRQGSPGDRKPDDKKDKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGISSFVDKDQLEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPTIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKIESLDPALLRPGRIDRKIEFPLPDIKTRRHIFKIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03781 445 Gene3D - 365 439 - -
Tsu07g03781 445 ProSitePatterns AAA-protein family signature. 330 348 IPR003960 GO:0005524|GO:0016887
Tsu07g03781 445 SMART AAA_5 223 362 IPR003593 -
Tsu07g03781 445 MobiDBLite consensus disorder prediction 1 55 - -
Tsu07g03781 445 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 35 445 - -
Tsu07g03781 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 438 IPR027417 -
Tsu07g03781 445 Pfam ATPase family associated with various cellular activities (AAA) 227 360 IPR003959 GO:0005524|GO:0016887
Tsu07g03781 445 MobiDBLite consensus disorder prediction 89 107 - -
Tsu07g03781 445 Pfam AAA+ lid domain 382 425 IPR041569 -
Tsu07g03781 445 Gene3D - 180 360 IPR027417 -
Tsu07g03781 445 Gene3D - 112 179 IPR012340 -
Tsu07g03781 445 MobiDBLite consensus disorder prediction 16 34 - -
Tsu07g03781 445 PANTHER BNAA08G13550D PROTEIN 35 445 - -
Tsu07g03781 445 Pfam Proteasomal ATPase OB C-terminal domain 114 167 IPR032501 -
Tsu07g03781 445 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 80 432 IPR005937 GO:0005737|GO:0030163|GO:0036402
Tsu07g03781 445 MobiDBLite consensus disorder prediction 89 110 - -
Tsu07g03781 445 CDD AAA 193 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03781 Tsu-Chr7 44054638 44059927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03781 188 430 Miscellaneous Gene Families AT5G58870 43.952 1.41e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03781 K03062 - gmx:100798835 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03781 07 44054638 44059927 Tsu07g03781 07 44054638 44059927 ECH
Tsu07g03781 07 44054638 44059927 Tsu01g02563 01 28406282 28410864 PCT