Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03754 atggaggaagaaggTGAAATATACGACGGCGTTAGAGCTGAATTCCCTCTTTCCTTCGGTAAACAATCCAAATCTCAAACCCCTCTCGAAACCATTCACAACGCTACTCGCCGCACTTCTTCTTCCAAAACCCCCAACGATTTTCCTTccatctcttcttcttccaagGAATGGATTCATTCCGTTCGTTCCTCCAAAAACCCTACCCCTCCTCCTCCCCTTCACGACGAATCCCCCCTCGTCGGACCTCCTCCACCGCCACCACATAATAACGACGAAGAGGaggatgaggatgatgatggcGAGATGATTGGTCCGCCTCCGCCACCACCTGGCTCCAATTTGGATGATGATTCCGATGCTGAAGACGATTCGGATGAAGACCAACCGAGTAAACGTTTTCGTATTCCTCTTAGCAACGAGATTGTGCTCAAGGGACATACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACACCGGTTCAAGAGTACTATCTGGAAGCTATGACTATATGGTCCGTATGTATGATTTCCAAGGAATGAATTCTCGTTTGCAATCGTTTCGACAAATTGAACCGTCTGAAGGGCATCAAATTCGCAATTTAAGCTGGAGTCCAACTGCTGATCGCTTTTTGTGTGTGACCGGATCAGCTCAAGCTAAGATTTACGATCGTGATGGCCTCACTCTGGGTGAATTTGTAAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGTCATATAACTGGATTGACATGTGGAGAGTGGCACCCAAAAACTAAGGAGACTATTTTAACATCATCAGAGGATGGGTCGCTCCGCATATGGGATGTAAATGACTTTACAACTCAGAAGCAGGTCATTAAACCAAAGCTCGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGATGGTAAATGCATTACTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAACCCGGATGGGGGAGTAGGCCtgatatatatattgaaaaatgtCATGAGGATGATATTACTAGTCTGAAATTTTCTTCTGATGGGAGAACCTTATTGTCAAGGAGCTCTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAGGAAGCATTAAAGGTATTTGAAGGACTGCCAAATCACTACGGACAAACAAATATTGGCTTCAGTCCTGATGAGCAACTATTTTTTACTGGAACATCTGTAGAAAGGGATAGCACAACTGGAGGTTTATTGTGCTTCTTTGATAGATTAAATCTCGAGCTTGTTTCAAAAGTTGGCATATCACCCACTTGCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATACGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCGAGGAAAAAATCAATTGATGACTTTGAGGCAAATCCTGTCATTCACAATCCTCATGCATTACCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATGACAGGACCTGGCTTTGGCGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGTGGTATGATTAAAGAGACATGGATGGATGAAGATCCAAGGGAAGCTATCCTAAAATATGCTGATGTTGCAGCAAAGGAACCAAAGTTCATAGCTCCAGCATATGCCGAAACTCAACCTGAGCCACTGTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1848 0.4253 MEEEGEIYDGVRAEFPLSFGKQSKSQTPLETIHNATRRTSSSKTPNDFPSISSSSKEWIHSVRSSKNPTPPPPLHDESPLVGPPPPPPHNNDEEEDEDDDGEMIGPPPPPPGSNLDDDSDAEDDSDEDQPSKRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNSRLQSFRQIEPSEGHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHITGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFTTQKQVIKPKLARPGRVPVTTCAWDHDGKCITGGIGDGSIQIWSIKPGWGSRPDIYIEKCHEDDITSLKFSSDGRTLLSRSSDDSLKVWDLRKTKEALKVFEGLPNHYGQTNIGFSPDEQLFFTGTSVERDSTTGGLLCFFDRLNLELVSKVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTISERGALVCVARAPRKKSIDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03754 615 MobiDBLite consensus disorder prediction 1 136 - -
Tsu07g03754 615 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 615 - -
Tsu07g03754 615 MobiDBLite consensus disorder prediction 513 543 - -
Tsu07g03754 615 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Tsu07g03754 615 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Tsu07g03754 615 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 280 - -
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Tsu07g03754 615 MobiDBLite consensus disorder prediction 593 615 - -
Tsu07g03754 615 MobiDBLite consensus disorder prediction 66 88 - -
Tsu07g03754 615 Gene3D - 233 473 IPR015943 GO:0005515
Tsu07g03754 615 Pfam WD domain, G-beta repeat 341 372 IPR001680 GO:0005515
Tsu07g03754 615 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Tsu07g03754 615 Pfam WD domain, G-beta repeat 300 326 IPR001680 GO:0005515
Tsu07g03754 615 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 287 IPR001680 GO:0005515
Tsu07g03754 615 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Tsu07g03754 615 Gene3D - 85 232 IPR015943 GO:0005515
Tsu07g03754 615 MobiDBLite consensus disorder prediction 513 532 - -
Tsu07g03754 615 MobiDBLite consensus disorder prediction 19 65 - -
Tsu07g03754 615 SMART WD40_4 183 223 IPR001680 GO:0005515
Tsu07g03754 615 SMART WD40_4 137 176 IPR001680 GO:0005515
Tsu07g03754 615 SMART WD40_4 235 278 IPR001680 GO:0005515
Tsu07g03754 615 SMART WD40_4 284 326 IPR001680 GO:0005515
Tsu07g03754 615 SMART WD40_4 333 372 IPR001680 GO:0005515
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 381 IPR001680 GO:0005515
Tsu07g03754 615 SUPERFAMILY WD40 repeat-like 113 460 IPR036322 GO:0005515
Tsu07g03754 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 374 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03754 265 445 Miscellaneous Gene Families AT5G08390 25.275 1.77e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03754 K24752 - gmx:100815380 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03754 07 43774833 43778975 Tsu07g03754 07 43774833 43778975 ECH